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 7OZR | pdb_00007ozr

Subtomogram average of authentic mumps virus nucleocapsid from HeLa cell lysate of long helical pitch


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7OZR

This is version 1.2 of the entry. See complete history. 

Literature

Molecular mechanisms of stress-induced reactivation in mumps virus condensates.

Zhang, X., Sridharan, S., Zagoriy, I., Eugster Oegema, C., Ching, C., Pflaesterer, T., Fung, H.K.H., Becher, I., Poser, I., Muller, C.W., Hyman, A.A., Savitski, M.M., Mahamid, J.

(2023) Cell 186: 1877-1894.e27

  • DOI: https://doi.org/10.1016/j.cell.2023.03.015
  • Primary Citation Related Structures: 
    7OZR

  • PubMed Abstract: 

    Negative-stranded RNA viruses can establish long-term persistent infection in the form of large intracellular inclusions in the human host and cause chronic diseases. Here, we uncover how cellular stress disrupts the metastable host-virus equilibrium in persistent infection and induces viral replication in a culture model of mumps virus. Using a combination of cell biology, whole-cell proteomics, and cryo-electron tomography, we show that persistent viral replication factories are dynamic condensates and identify the largely disordered viral phosphoprotein as a driver of their assembly. Upon stress, increased phosphorylation of the phosphoprotein at its interaction interface with the viral polymerase coincides with the formation of a stable replication complex. By obtaining atomic models for the authentic mumps virus nucleocapsid, we elucidate a concomitant conformational change that exposes the viral genome to its replication machinery. These events constitute a stress-mediated switch within viral condensates that provide an environment to support upregulation of viral replication.


  • Organizational Affiliation: 
    • Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstraße 1, 69117 Heidelberg, Germany.

Macromolecule Content 

  • Total Structure Weight: 63.11 kDa 
  • Atom Count: 3,320 
  • Modeled Residue Count: 409 
  • Deposited Residue Count: 555 
  • Unique protein chains: 1
  • Unique nucleic acid chains: 1

Macromolecules


Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Nucleocapsid549Mumps virus genotype AMutation(s): 0 
UniProt
Find proteins for D5LWW7 (Mumps virus (strain Enders))
Explore D5LWW7 
Go to UniProtKB:  D5LWW7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD5LWW7
Sequence Annotations
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Reference Sequence
Find similar nucleic acids by:  Sequence
Entity ID: 2
MoleculeChains LengthOrganismImage
RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')B [auth N]6Mumps virus genotype A
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
MODEL REFINEMENTCoot
RECONSTRUCTIONRELION

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union760067

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-01
    Type: Initial release
  • Version 1.1: 2023-08-23
    Changes: Data collection, Database references
  • Version 1.2: 2024-03-13
    Changes: Database references, Refinement description