7OZG

PMCA-amplified alpha-synuclein fibril polymorph, Parkinson's Disease patient-derived seeds

PDB DOI: https://doi.org/10.2210/pdb7OZG/pdb
EM Map EMD-13123: EMDB EMDataResource

Classification: PROTEIN FIBRIL
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-06-28 Released: 2022-07-13
Deposition Author(s): Frieg, B., Geraets, J.A., Schroeder, G.F.
Funding Organization(s): European Research Council (ERC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

alpha-synuclein polymorphism determines oligodendroglial dysfunction

Frieg, B., Geraets, J.A., Strohaeker, T., Dienemann, C., Mavroeidi, P., Jung, B.C., Woojin, S.K., Lee, S.-J., Xilouri, M., Zweckstetter, M., Schroeder, G.F.

To be published.

Macromolecule Content

Total Structure Weight: 144.76 kDa
Atom Count: 4,960
Modelled Residue Count: 730
Deposited Residue Count: 1,400
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alpha-synuclein	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	140	Homo sapiens	Mutation(s): 0 Gene Names: SNCA, NACP, PARK1
UniProt & NIH Common Fund Data Resources
Find proteins for P37840 (Homo sapiens) Explore P37840 Go to UniProtKB: P37840
PHAROS: P37840 GTEx: ENSG00000145335
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P37840
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	3.1
MODEL REFINEMENT	PHENIX
MODEL REFINEMENT	Coot

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-07-13

Deposition Author(s):

Schroeder, G.F.

Funding Organization	Location	Grant Number
European Research Council (ERC)	European Union	787679

Revision History (Full details and data files)

Version 1.0: 2022-07-13
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.