7OXD | pdb_00007oxd

Crystal structure of Scytonema hofmanni transposition protein TniQ


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free: 
    0.195 (Depositor), 0.202 (DCC) 
  • R-Value Work: 
    0.188 (Depositor), 0.193 (DCC) 
  • R-Value Observed: 
    0.189 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 7OXD

This is version 1.1 of the entry. See complete history

Literature

Target site selection and remodelling by type V CRISPR-transposon systems.

Querques, I.Schmitz, M.Oberli, S.Chanez, C.Jinek, M.

(2021) Nature 599: 497-502

  • DOI: https://doi.org/10.1038/s41586-021-04030-z
  • Primary Citation Related Structures: 
    7OXD, 7PLA, 7PLH, 9GO0

  • PubMed Abstract: 

    Canonical CRISPR-Cas systems provide adaptive immunity against mobile genetic elements 1 . However, type I-F, I-B and V-K systems have been adopted by Tn7-like transposons to direct RNA-guided transposon insertion 2-7 . Type V-K CRISPR-associated transposons rely on the pseudonuclease Cas12k, the transposase TnsB, the AAA+ ATPase TnsC and the zinc-finger protein TniQ 7 , but the molecular mechanism of RNA-directed DNA transposition has remained elusive. Here we report cryo-electron microscopic structures of a Cas12k-guide RNA-target DNA complex and a DNA-bound, polymeric TnsC filament from the CRISPR-associated transposon system of the photosynthetic cyanobacterium Scytonema hofmanni. The Cas12k complex structure reveals an intricate guide RNA architecture and critical interactions mediating RNA-guided target DNA recognition. TnsC helical filament assembly is ATP-dependent and accompanied by structural remodelling of the bound DNA duplex. In vivo transposition assays corroborate key features of the structures, and biochemical experiments show that TniQ restricts TnsC polymerization, while TnsB interacts directly with TnsC filaments to trigger their disassembly upon ATP hydrolysis. Together, these results suggest that RNA-directed target selection by Cas12k primes TnsC polymerization and DNA remodelling, generating a recruitment platform for TnsB to catalyse site-specific transposon insertion. Insights from this work will inform the development of CRISPR-associated transposons as programmable site-specific gene insertion tools.


  • Organizational Affiliation
    • Department of Biochemistry, University of Zurich, Zurich, Switzerland.

Macromolecule Content 

  • Total Structure Weight: 17.76 kDa 
  • Atom Count: 1,470 
  • Modeled Residue Count: 155 
  • Deposited Residue Count: 155 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ShTniQ155Scytonema hofmanniiMutation(s): 0 
UniProt
Find proteins for A0A8X6EH09 (Scytonema hofmannii)
Explore A0A8X6EH09 
Go to UniProtKB:  A0A8X6EH09
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A8X6EH09
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free:  0.195 (Depositor), 0.202 (DCC) 
  • R-Value Work:  0.188 (Depositor), 0.193 (DCC) 
  • R-Value Observed: 0.189 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 41.636α = 90
b = 49.875β = 90
c = 86.8γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
autoPROCdata scaling
AutoSolphasing

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland31003A_182567
European Research Council (ERC)ERC-CoG-820152

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-01
    Type: Initial release
  • Version 1.1: 2024-06-19
    Changes: Data collection