SlyB encapsulates outer membrane proteins in stress-induced lipid nanodomains
Janssens, A., Nguyen, V.S., Cecil, A.J., Van der Verren, S.E., Timmerman, E., Deghelt, M., Pak, A.J., Collet, J.F., Impens, F., Remaut, H.(2023) Nature
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
(2023) Nature
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Outer membrane lipoprotein slyB | 155 | Escherichia coli BW25113 | Mutation(s): 0 Gene Names: slyB, SFxv_1871 | ![]() | |
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
L8Z (Subject of Investigation/LOI) Query on L8Z | BA [auth C] FB [auth H] HA [auth D] LB [auth I] N [auth A] | (2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-5-[[(~{E},3~{R})-3-dodecanoyloxytetradec-5-enoyl]amino]-6-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-3-oxidanyl-5-[[(~{E},3~{R})-3-oxidanyltetradec-11-enoyl]amino]-4-[(~{E},3~{R})-3-oxidanyltetradec-5-enoyl]oxy-6-phosphonooxy-oxan-2-yl]methoxy]-3-phosphonooxy-4-[(~{E},3~{R})-3-tetradecanoyloxytetradec-7-enoyl]oxy-oxan-2-yl]methoxy]-4,5-bis(oxidanyl)oxane-2-carboxylic acid C102 H182 N2 O32 P2 NOEIKEOYYQLMFH-XTQPGWFYSA-N | |||
LPP (Subject of Investigation/LOI) Query on LPP | AB [auth G] CA [auth C] GB [auth H] IA [auth D] MB [auth I] | 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE C35 H69 O8 P PORPENFLTBBHSG-MGBGTMOVSA-N | |||
PLM (Subject of Investigation/LOI) Query on PLM | AA [auth C] BB [auth H] CB [auth H] DA [auth D] EA [auth D] | PALMITIC ACID C16 H32 O2 IPCSVZSSVZVIGE-UHFFFAOYSA-N | |||
GOL (Subject of Investigation/LOI) Query on GOL | DB [auth H] FA [auth D] JB [auth I] LA [auth E] M [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Task | Software Package | Version |
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MODEL REFINEMENT | PHENIX | |
RECONSTRUCTION | RELION | 3.1 |
Funding Organization | Location | Grant Number |
---|---|---|
Research Foundation - Flanders (FWO) | Belgium | G0G0818N |
Research Foundation - Flanders (FWO) | Belgium | G0H5916N |
Research Foundation - Flanders (FWO) | Belgium | FWOTM903 |
Research Foundation - Flanders (FWO) | Belgium | 12ZM421N |