7O61

Crystal structure of the C-terminal PASTA domains of Staphylococcus aureus PBP1

PDB DOI: https://doi.org/10.2210/pdb7O61/pdb

Classification: PROTEIN BINDING
Organism(s): Staphylococcus aureus subsp. aureus NCTC 8325
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2021-04-09 Released: 2022-04-20
Deposition Author(s): Rao, V.A., Lewis, R.J.
Funding Organization(s): Medical Research Council (MRC, United Kingdom)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.78 Å
R-Value Free: 0.210
R-Value Work: 0.188
R-Value Observed: 0.189

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the C-terminal PASTA domains of Staphylococcus aureus PBP1

Rao, V.A., Lewis, R.J.

To be published.

Macromolecule Content

Total Structure Weight: 32.79 kDa
Atom Count: 1,882
Modelled Residue Count: 233
Deposited Residue Count: 304
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Penicillin-binding protein 1	A, B	152	Staphylococcus aureus subsp. aureus NCTC 8325	Mutation(s): 0 Gene Names: SAOUHSC_01145
UniProt
Find proteins for Q2FZ94 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FZ94 Go to UniProtKB: Q2FZ94
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q2FZ94
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.78 Å
R-Value Free: 0.210
R-Value Work: 0.188
R-Value Observed: 0.189
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.782	α = 90
b = 81.393	β = 90
c = 89.617	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
Aimless	data scaling
PHENIX	refinement
PHASER	phasing
Coot	model building

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-04-20

Deposition Author(s):

Funding Organization	Location	Grant Number
Medical Research Council (MRC, United Kingdom)	United Kingdom	MR/N002679/1

Revision History (Full details and data files)

Version 1.0: 2022-04-20
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.