7O61 | pdb_00007o61

Crystal structure of the C-terminal PASTA domains of Staphylococcus aureus PBP1

PDB DOI: https://doi.org/10.2210/pdb7O61/pdb

Classification: PROTEIN BINDING
Organism(s): Staphylococcus aureus subsp. aureus NCTC 8325
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2021-04-09 Released: 2022-04-20
Deposition Author(s): Rao, V.A., Lewis, R.J.
Funding Organization(s): Medical Research Council (MRC, United Kingdom)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.78 Å
R-Value Free:
0.210 (Depositor), 0.247 (DCC)
R-Value Work:
0.188 (Depositor)
R-Value Observed:
0.189 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the C-terminal PASTA domains of Staphylococcus aureus PBP1

Rao, V.A., Lewis, R.J.

To be published.

Macromolecule Content

Total Structure Weight: 32.79 kDa
Atom Count: 1,882
Modeled Residue Count: 233
Deposited Residue Count: 304
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Penicillin-binding protein 1	A, B	152	Staphylococcus aureus subsp. aureus NCTC 8325	Mutation(s): 0 Gene Names: SAOUHSC_01145
UniProt
Find proteins for Q2FZ94 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FZ94 Go to UniProtKB: Q2FZ94
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q2FZ94
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.78 Å
R-Value Free: 0.210 (Depositor), 0.247 (DCC)
R-Value Work: 0.188 (Depositor)
R-Value Observed: 0.189 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.782	α = 90
b = 81.393	β = 90
c = 89.617	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
Aimless	data scaling
PHENIX	refinement
PHASER	phasing
Coot	model building

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2022-04-20

Deposition Author(s):

Funding Organization	Location	Grant Number
Medical Research Council (MRC, United Kingdom)	United Kingdom	MR/N002679/1

Revision History (Full details and data files)

Version 1.0: 2022-04-20
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.