7O39 | pdb_00007o39

Crystal structure of S. aureus DivIVA N terminal domain

PDB DOI: https://doi.org/10.2210/pdb7O39/pdb

Classification: PROTEIN BINDING
Organism(s): Staphylococcus aureus subsp. aureus NCTC 8325
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-04-01 Released: 2021-04-14
Deposition Author(s): Rao, V.A., Booth, S., Lewis, R.J.
Funding Organization(s): Medical Research Council (MRC, United Kingdom)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free:
0.185 (Depositor), 0.187 (DCC)
R-Value Work:
0.160 (Depositor), 0.164 (DCC)
R-Value Observed:
0.161 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 7O39

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of S. aureus DivIVA N terminal domain

Rao, V.A., Booth, S., Lewis, R.J.

To be published.

Macromolecule Content

Total Structure Weight: 13.82 kDa
Atom Count: 999
Modeled Residue Count: 102
Deposited Residue Count: 118
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DivIVA	A, B	59	Staphylococcus aureus subsp. aureus NCTC 8325	Mutation(s): 0 Gene Names: SAOUHSC_01158
UniProt
Find proteins for Q2FZ83 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FZ83 Go to UniProtKB: Q2FZ83
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q2FZ83
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free: 0.185 (Depositor), 0.187 (DCC)
R-Value Work: 0.160 (Depositor), 0.164 (DCC)
R-Value Observed: 0.161 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 28.108	α = 90
b = 39.175	β = 90
c = 111.249	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
xia2	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2021-04-14

Deposition Author(s):

Funding Organization	Location	Grant Number
Medical Research Council (MRC, United Kingdom)	United Kingdom	MR/N002679/1

Revision History (Full details and data files)

Version 1.0: 2021-04-14
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Database references, Refinement description

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.