7O0B | pdb_00007o0b

TRIM3 Filamin domain

PDB DOI: https://doi.org/10.2210/pdb7O0B/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-03-26 Released: 2022-04-13
Deposition Author(s): Williams, F.P., Yikilmazsoy, A., Hennig, J.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.13 Å
R-Value Free:
0.258 (Depositor), 0.255 (DCC)
R-Value Work:
0.227 (Depositor), 0.227 (DCC)
R-Value Observed:
0.228 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7O0B

This is version 1.1 of the entry. See complete history.

Literature

TRIM3 Filamin domain

Williams, F.P., Yikilmazsoy, A., Hennig, J.

To be published.

Macromolecule Content

Total Structure Weight: 11.31 kDa
Atom Count: 851
Modeled Residue Count: 104
Deposited Residue Count: 106
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tripartite motif-containing protein 3	A	106	Homo sapiens	Mutation(s): 0 Gene Names: TRIM3, BERP, RNF22, RNF97 EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for O75382 (Homo sapiens) Explore O75382 Go to UniProtKB: O75382
PHAROS: O75382 GTEx: ENSG00000110171
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O75382
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.13 Å
R-Value Free: 0.258 (Depositor), 0.255 (DCC)
R-Value Work: 0.227 (Depositor), 0.227 (DCC)
R-Value Observed: 0.228 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.017	α = 90
b = 33.504	β = 117.253
c = 58.844	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing
Coot	model building

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2022-04-13

Deposition Author(s):

Yikilmazsoy, A.

Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	SPP1935

Revision History (Full details and data files)

Version 1.0: 2022-04-13
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.