7NUW

Crystal structure of the TIR domain of human TLR1 (crystallised with Zn2+ ions)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.215 
  • R-Value Observed: 0.217 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Modulation of Toll-like receptor 1 intracellular domain structure and activity by Zn 2+ ions.

Lushpa, V.A.Goncharuk, M.V.Lin, C.Zalevsky, A.O.Talyzina, I.A.Luginina, A.P.Vakhrameev, D.D.Shevtsov, M.B.Goncharuk, S.A.Arseniev, A.S.Borshchevskiy, V.I.Wang, X.Mineev, K.S.

(2021) Commun Biol 4: 1003-1003

  • DOI: https://doi.org/10.1038/s42003-021-02532-0
  • Primary Citation of Related Structures:  
    7NT7, 7NUW, 7NUX

  • PubMed Abstract: 

    Toll-like receptors (TLRs) play an important role in the innate immune response. While a lot is known about the structures of their extracellular parts, many questions are still left unanswered, when the structural basis of TLR activation is analyzed for the TLR intracellular domains. Here we report the structure and dynamics of TLR1 toll-interleukin like (TIR) cytoplasmic domain in crystal and in solution. We found that the TLR1-TIR domain is capable of specific binding of Zn with nanomolar affinity. Interactions with Zn are mediated by cysteine residues 667 and 686 and C667 is essential for the Zn binding. Potential structures of the TLR1-TIR/Zn complex were predicted in silico. Using the functional assays for the heterodimeric TLR1/2 receptor, we found that both Zn addition and Zn depletion affect the activity of TLR1, and C667A mutation disrupts the receptor activity. Analysis of C667 position in the TLR1 structure and possible effects of C667A mutation, suggests that zinc-binding ability of TLR1-TIR domain is critical for the receptor activation.


  • Organizational Affiliation

    Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow, Russia.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Toll-like receptor 1162Homo sapiensMutation(s): 0 
Gene Names: TLR1KIAA0012
EC: 3.2.2.6
UniProt & NIH Common Fund Data Resources
Find proteins for Q15399 (Homo sapiens)
Explore Q15399 
Go to UniProtKB:  Q15399
PHAROS:  Q15399
GTEx:  ENSG00000174125 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ15399
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.215 
  • R-Value Observed: 0.217 
  • Space Group: P 62 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 101.516α = 90
b = 101.516β = 90
c = 68.86γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Higher Education of the Russian FederationRussian Federationagreement #075-00337-20-03, project FSMG-2020-0003

Revision History  (Full details and data files)

  • Version 1.0: 2021-08-25
    Type: Initial release
  • Version 1.1: 2021-10-13
    Changes: Data collection, Database references
  • Version 1.2: 2024-01-31
    Changes: Data collection, Refinement description
  • Version 1.3: 2024-10-16
    Changes: Structure summary