7NTM

Cryo-EM structure of S.cerevisiae native alcohol dehydrogenase 1 (ADH1) in its tetrameric apo state

• PDB DOI: https://doi.org/10.2210/pdb7NTM/pdb
• EM Map EMD-12591: EMDB EMDataResource

• Classification: OXIDOREDUCTASE
• Organism(s): Saccharomyces cerevisiae S288C
• Mutation(s): No 


• Deposited: 2021-03-10 Released: 2022-10-12 
• Deposition Author(s): Nzigou Mandouckou, J.A., Carroni, M., Haeggstrom, J.Z., Thulasingam, M.
• Funding Organization(s): Swedish Research Council

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.86 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental

Literature

Cryo-EM structure of S.cerevisiae native alcohol dehydrogenase 1 (ADH1) in its tetrameric apo state

Nzigou Mandouckou, J.A., Carroni, M., Haeggstrom, J.Z., Thulasingam, M.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: microscopy

Macromolecule Content

• Total Structure Weight: 147.56 kDa 
• Atom Count: 10,336 
• Modelled Residue Count: 1,388 
• Deposited Residue Count: 1,388 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alcohol dehydrogenase 1	A, B, C [auth D], D [auth C]	347	Saccharomyces cerevisiae S288C	Mutation(s): 0  EC: 1.1.1.1 (PDB Primary Data), 1.1.1.78 (UniProt), 1.1.1.54 (UniProt)
UniProt
Find proteins for P00330 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P00330  Go to UniProtKB:  P00330

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN (Subject of Investigation/LOI)	E [auth A], F [auth A], G [auth B], H [auth B], I [auth D], J [auth D], K [auth C], L [auth C]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.86 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	v2.15.041
MODEL REFINEMENT	REFMAC	5

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-10-12 
Deposition Author(s): Nzigou Mandouckou, J.A., Carroni, M., Haeggstrom, J.Z., Thulasingam, M.

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Funding Organization	Location	Grant Number
Swedish Research Council	Sweden	2018-02818

Revision History  

• Version 1.0: 2022-10-12
  Type: Initial release
  
• Version 1.1: 2024-11-13
  Changes: Data collection, Refinement description, Structure summary