7NK0

Structure of the BIR1 domain of cIAP2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.30 Å
  • R-Value Free: 0.356 
  • R-Value Work: 0.295 
  • R-Value Observed: 0.298 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure-based identification of a new IAP-targeting compound that induces cancer cell death inducing NF-kappa B pathway.

Cossu, F.Camelliti, S.Lecis, D.Sorrentino, L.Majorini, M.T.Milani, M.Mastrangelo, E.

(2021) Comput Struct Biotechnol J 19: 6366-6374

  • DOI: https://doi.org/10.1016/j.csbj.2021.11.034
  • Primary Citation of Related Structures:  
    7NK0

  • PubMed Abstract: 

    Inhibitors of apoptosis proteins (IAPs) are validated onco-targets, as their overexpression correlates with cancer onset, progression, diffusion and chemoresistance. IAPs regulate cell death survival pathways, inflammation, and immunity. Targeting IAPs, by impairing their protein-protein interaction surfaces, can affect events occurring at different stages of cancer development. To this purpose, we employed a rational virtual screening approach to identify compounds predicted to interfere with the assembly of pro-survival macromolecular complexes. One of the candidates, FC2, was shown to bind in vitro the BIR1 domains of both XIAP and cIAP2. Moreover, we demonstrated that FC2 can induce cancer cell death as a single agent and, more potently, in combination with the Smac-mimetic SM83 or with the cytokine TNF. FC2 determined a prolonged activation of the NF-κB pathway, accompanied to a stabilization of XIAP-TAB1 complex. This candidate molecule represents a valuable lead compound for the development of a new class of IAP-antagonists for cancer treatment.


  • Organizational Affiliation

    CNR-IBF, Consiglio Nazionale delle Ricerche - Istituto di Biofisica, Via Celoria, 26, I-20133 Milan, Italy.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Baculoviral IAP repeat-containing protein 3A [auth D],
B [auth E]
98Homo sapiensMutation(s): 0 
Gene Names: BIRC3API2MIHCRNF49
EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for Q13489 (Homo sapiens)
Explore Q13489 
Go to UniProtKB:  Q13489
PHAROS:  Q13489
GTEx:  ENSG00000023445 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13489
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.30 Å
  • R-Value Free: 0.356 
  • R-Value Work: 0.295 
  • R-Value Observed: 0.298 
  • Space Group: P 64
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 93.43α = 90
b = 93.43β = 90
c = 42.43γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
MOLREPphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Italian Association for Cancer ResearchItalyMFAG-17083

Revision History  (Full details and data files)

  • Version 1.0: 2022-01-12
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Data collection, Refinement description
  • Version 1.2: 2024-10-16
    Changes: Structure summary