7NEN | pdb_00007nen

Crystal structure of outer surface protein C (OspC) from Borrelia garinii

PDB DOI: https://doi.org/10.2210/pdb7NEN/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Borreliella garinii
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-02-04 Released: 2021-04-07
Deposition Author(s): Sliwiak, J., Bierwagen, P., Ruszkowski, M., Jaskolski, M., Urbanowicz, A.
Funding Organization(s): Polish National Science Centre

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.98 Å
R-Value Free:
0.328 (Depositor), 0.328 (DCC)
R-Value Work:
0.255 (Depositor), 0.260 (DCC)
R-Value Observed:
0.260 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Structural studies of outer surface proteins (OspC) from different Borrelia strains

Sliwiak, J., Bierwagen, P., Ruszkowski, M., Jaskolski, M., Urbanowicz, A.

To be published.

Macromolecule Content

Total Structure Weight: 18.65 kDa
Atom Count: 1,349
Modeled Residue Count: 160
Deposited Residue Count: 176
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer surface protein C	A	176	Borreliella garinii	Mutation(s): 0
UniProt
Find proteins for H6VGK2 (Borreliella garinii) Explore H6VGK2 Go to UniProtKB: H6VGK2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	H6VGK2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.98 Å
R-Value Free: 0.328 (Depositor), 0.328 (DCC)
R-Value Work: 0.255 (Depositor), 0.260 (DCC)
R-Value Observed: 0.260 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46	α = 90
b = 151.85	β = 90
c = 57.94	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XSCALE	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-04-07

Deposition Author(s):

Funding Organization	Location	Grant Number
Polish National Science Centre	Poland	2015/17/B/NZ1/ 00873

Revision History (Full details and data files)

Version 1.0: 2021-04-07
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.