7NCR | pdb_00007ncr

Cryo-EM structure of Pepper cryptic virus 1 VLP

PDB DOI: https://doi.org/10.2210/pdb7NCR/pdb
EM Map EMD-12270: EMDB EMDataResource

Classification: VIRUS LIKE PARTICLE
Organism(s): Pepper cryptic virus 1
Expression System: Nicotiana benthamiana
Mutation(s): No

Deposited: 2021-01-29 Released: 2021-05-19
Deposition Author(s): Byrne, M.J., Sainsbury, F., Ranson, N.A.
Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.90 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 7NCR

This is version 1.2 of the entry. See complete history.

Literature

Structure of Pepper Cryptic Virus 1 VLP

Byrne, M.J., Sainsbury, F., Ranson, N.A., Kashyap, A., Esquirol, L.

To be published.

Macromolecule Content

Total Structure Weight: 95.25 kDa
Atom Count: 5,588
Modeled Residue Count: 668
Deposited Residue Count: 824
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Coat protein	A, B	412	Pepper cryptic virus 1	Mutation(s): 0
UniProt
Find proteins for F8VBM8 (Pepper cryptic virus 1) Explore F8VBM8 Go to UniProtKB: F8VBM8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	F8VBM8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.90 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2021-05-19

Deposition Author(s):

Funding Organization	Location	Grant Number
Biotechnology and Biological Sciences Research Council (BBSRC)	United Kingdom	BB/R00160X/1

Revision History (Full details and data files)

Version 1.0: 2021-05-19
Type: Initial release
Version 1.1: 2024-07-10
Changes: Data collection, Database references, Derived calculations
Version 1.2: 2025-07-02
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.