7N8U

Crystal structure of Triosephosphate isomerase from Candidatus Prometheoarchaeum syntrophicum

PDB DOI: https://doi.org/10.2210/pdb7N8U/pdb

Classification: ISOMERASE
Organism(s): Candidatus Prometheoarchaeum syntrophicum
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-06-15 Released: 2022-06-15
Deposition Author(s): Vickers, C.J., Patrick, W.M., Fraga, D.
Funding Organization(s): Royal Society of New Zealand

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.98 Å
R-Value Free: 0.207
R-Value Work: 0.166
R-Value Observed: 0.168

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of PsyTPI - Candidatus Prometheoarchaeum syntrophicum triosephosphate isomerase.

Vickers, C.J., Patrick, W.M., Fraga, D.

To be published.

Macromolecule Content

Total Structure Weight: 58.2 kDa
Atom Count: 4,385
Modelled Residue Count: 530
Deposited Residue Count: 532
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Triosephosphate isomerase	A, B	266	Candidatus Prometheoarchaeum syntrophicum	Mutation(s): 0 Gene Names: tpiA, DSAG12_02076 EC: 5.3.1.1
UniProt
Find proteins for A0A5B9DC34 (Candidatus Prometheoarchaeum syntrophicum) Explore A0A5B9DC34 Go to UniProtKB: A0A5B9DC34
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A5B9DC34
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.98 Å
R-Value Free: 0.207
R-Value Work: 0.166
R-Value Observed: 0.168
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 38.289	α = 90
b = 121.35	β = 90
c = 129.263	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
MOSFLM	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-06-15

Deposition Author(s):

Funding Organization	Location	Grant Number
Royal Society of New Zealand	New Zealand	--

Revision History (Full details and data files)

Version 1.0: 2022-06-15
Type: Initial release
Version 1.1: 2023-10-18
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.