7N5D

Composite Structure of Mechanosensitive Ion Channel Flycatcher1 in GDN


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural insights into the Venus flytrap mechanosensitive ion channel Flycatcher1.

Jojoa-Cruz, S.Saotome, K.Tsui, C.C.A.Lee, W.H.Sansom, M.S.P.Murthy, S.E.Patapoutian, A.Ward, A.B.

(2022) Nat Commun 13: 850-850

  • DOI: https://doi.org/10.1038/s41467-022-28511-5
  • Primary Citation of Related Structures:  
    7N5D, 7N5E, 7N5F, 7N5G

  • PubMed Abstract: 

    Flycatcher1 (FLYC1), a MscS homolog, has recently been identified as a candidate mechanosensitive (MS) ion channel involved in Venus flytrap prey recognition. FLYC1 is a larger protein and its sequence diverges from previously studied MscS homologs, suggesting it has unique structural features that contribute to its function. Here, we characterize FLYC1 by cryo-electron microscopy, molecular dynamics simulations, and electrophysiology. Akin to bacterial MscS and plant MSL1 channels, we find that FLYC1 central core includes side portals in the cytoplasmic cage that regulate ion preference and conduction, by identifying critical residues that modulate channel conductance. Topologically unique cytoplasmic flanking regions can adopt 'up' or 'down' conformations, making the channel asymmetric. Disruption of an up conformation-specific interaction severely delays channel deactivation by 40-fold likely due to stabilization of the channel open state. Our results illustrate novel structural features and likely conformational transitions that regulate mechano-gating of FLYC1.


  • Organizational Affiliation

    Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, CA, 92037, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Mechanosensitive ion channel Flycatcher1
A, B, C, D, E
A, B, C, D, E, F, G
762Dionaea muscipulaMutation(s): 0 
Gene Names: FLYC1
Membrane Entity: Yes 
UniProt
Find proteins for A0A7U3W892 (Dionaea muscipula)
Explore A0A7U3W892 
Go to UniProtKB:  A0A7U3W892
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7U3W892
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONUCSF Chimera1.14
MODEL REFINEMENTCoot0.9
MODEL REFINEMENTPHENIX1.18.2-3874
MODEL REFINEMENTRosetta3.10

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesHL143297
Wellcome TrustUnited Kingdom208361/Z/17/Z
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/N000145/1
Engineering and Physical Sciences Research CouncilUnited KingdomEP/R004722/1

Revision History  (Full details and data files)

  • Version 1.0: 2022-02-16
    Type: Initial release
  • Version 1.1: 2022-03-02
    Changes: Database references