Improved ligand discovery using micro-beam data collection at the edge of protein crystals
Soares, A.S., Jakoncic, J.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Endo-1,4-beta-xylanase | 190 | Trichoderma reesei | Mutation(s): 0  EC: 3.2.1.8 | ||
UniProt | |||||
Find proteins for P36217 (Hypocrea jecorina (strain ATCC 56765 / BCRC 32924 / NRRL 11460 / Rut C-30)) Explore P36217  Go to UniProtKB:  P36217 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P36217 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ARG (Subject of Investigation/LOI) Query on ARG | B [auth A] | ARGININE C6 H15 N4 O2 ODKSFYDXXFIFQN-BYPYZUCNSA-O | |||
EDO Query on EDO | H [auth A], I [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
NA Query on NA | C [auth A], D [auth A], E [auth A], F [auth A], G [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
PCA Query on PCA | A | L-PEPTIDE LINKING | C5 H7 N O3 | GLN |
Length ( Å ) | Angle ( ˚ ) |
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a = 46.41 | α = 90 |
b = 38.99 | β = 107.64 |
c = 57.11 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R21 GM129570 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | P30 GM133893 |
Department of Energy (DOE, United States) | United States | KP 1605010 |
Department of Energy (DOE, United States) | United States | DE SC0012704 |