7M97

Crystal structure of the bromodomain from Plasmodium falciparum bromodomain protein 1

• PDB DOI: https://doi.org/10.2210/pdb7M97/pdb

• Classification: NUCLEAR PROTEIN
• Organism(s): Plasmodium falciparum 3D7
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2021-03-30 Released: 2021-05-26 
• Deposition Author(s): Glass, K.C.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.235 
• R-Value Work: 0.194 
• R-Value Observed: 0.196 

Starting Model: experimental

Literature

Crystal structure of the bromodomain from Plasmodium falciparum bromodomain protein 1

Alkrimi, S., Phillips, M., Nix, J.C., Glass, K.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 15.04 kDa 
• Atom Count: 1,116 
• Modelled Residue Count: 124 
• Deposited Residue Count: 131 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bromodomain protein 1	A	131	Plasmodium falciparum 3D7	Mutation(s): 1  Gene Names: PF3D7_1033700
UniProt
Find proteins for Q8IJ72 (Plasmodium falciparum (isolate 3D7)) Explore Q8IJ72  Go to UniProtKB:  Q8IJ72

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.235 
• R-Value Work: 0.194 
• R-Value Observed: 0.196 
• Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 38.051	α = 90
b = 88.667	β = 90
c = 106.797	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHASER	phasing
XDS	data scaling
XDS	data reduction
Coot	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2021-05-26 
Deposition Author(s): Glass, K.C.

Revision History  

• Version 1.0: 2021-05-26
  Type: Initial release
  
• Version 1.1: 2023-10-18
  Changes: Data collection, Database references, Refinement description