Crystal structure of GenB4 in complex with external aldimine of PLP-sisomicin
Bury, P.S., Huang, F., Leadlay, P.F., Dias, M.V.B.(2021) ACS Catal 
Experimental Data Snapshot
Starting Model: experimental
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(2021) ACS Catal 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
C-6' aminotransferase | 446 | Micromonospora echinospora | Mutation(s): 0  Gene Names: gntH, genB4, JD80_03664 | ||
UniProt | |||||
Find proteins for Q6QVT7 (Micromonospora echinospora) Explore Q6QVT7  Go to UniProtKB:  Q6QVT7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6QVT7 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SBV (Subject of Investigation/LOI) Query on SBV | G [auth B] | (1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2-amino-2,3,4,6-tetradeoxy-6-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-beta-L-threo-hexopyranoside C27 H49 N6 O12 P RIDGEVUBNCTQEZ-LVJYRULHSA-N | |||
YS7 (Subject of Investigation/LOI) Query on YS7 | D [auth A] | (1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2-amino-2,3,4,6-tetradeoxy-6-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-alpha-D-erythro-hexopyranoside C27 H49 N6 O12 P RIDGEVUBNCTQEZ-IXQBVWJDSA-N | |||
PG4 Query on PG4 | C [auth A] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N | |||
CL Query on CL | E [auth A], F [auth A], H [auth B], I [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 71.455 | α = 90 |
b = 75.036 | β = 90 |
c = 186.031 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
Aimless | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
MrBUMP | phasing |
Funding Organization | Location | Grant Number |
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Sao Paulo Research Foundation (FAPESP) | Brazil | 2014/15971-3 |
Sao Paulo Research Foundation (FAPESP) | Brazil | 2015/09188-8 |
Sao Paulo Research Foundation (FAPESP) | Brazil | 2018/00351-1 |