7LLA

Structure of human ATP citrate lyase in complex with acetyl-CoA and oxaloacetate (EM map was generated in Cryosparc with non-uniform refinement)

PDB DOI: https://doi.org/10.2210/pdb7LLA/pdb
EM Map EMD-23413: EMDB EMDataResource

Classification: LYASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2021-02-03 Released: 2021-03-03
Deposition Author(s): Wei, X., Marmorstein, R.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Reply to: Acetyl-CoA is produced by the citrate synthase homology module of ATP-citrate lyase.

Wei, X., Marmorstein, R.

(2021) Nat Struct Mol Biol 28: 639-641

PubMed: 34294921 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1038/s41594-021-00625-2
Primary Citation of Related Structures:
7LIW, 7LJ9, 7LLA

Organizational Affiliation

Department of Biochemistry & Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

Macromolecule Content

Total Structure Weight: 488.22 kDa
Atom Count: 31,900
Modelled Residue Count: 4,084
Deposited Residue Count: 4,404
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP-citrate synthase	A, B, C, D	1,101	Homo sapiens	Mutation(s): 0 Gene Names: ACLY EC: 2.3.3.8
UniProt & NIH Common Fund Data Resources
Find proteins for P53396 (Homo sapiens) Explore P53396 Go to UniProtKB: P53396
PHAROS: P53396 GTEx: ENSG00000131473
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P53396
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACO (Subject of Investigation/LOI) Query on ACO Download Ideal Coordinates CCD File SDF format, chain L [auth C] SDF format, chain E [auth A] SDF format, chain I [auth B] SDF format, chain O [auth D] MOL2 format, chain L [auth C] MOL2 format, chain E [auth A] MOL2 format, chain I [auth B] MOL2 format, chain O [auth D] mmCIF format, chain L [auth C] mmCIF format, chain E [auth A] mmCIF format, chain I [auth B] mmCIF format, chain O [auth D]	E [auth A], I [auth B], L [auth C], O [auth D]	*ACETYL COENZYME A** C₂₃ H₃₈ N₇ O₁₇ P₃ S ZSLZBFCDCINBPY-ZSJPKINUSA-N		Interactions Focus chain E [auth A] Focus chain I [auth B] Focus chain L [auth C] Focus chain O [auth D] Interactions & Density Focus chain E [auth A] Focus chain I [auth B] Focus chain L [auth C] Focus chain O [auth D]
OAA (Subject of Investigation/LOI) Query on OAA Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain K [auth C] SDF format, chain F [auth A] SDF format, chain H [auth A] SDF format, chain J [auth B] SDF format, chain M [auth C] SDF format, chain N [auth D] SDF format, chain P [auth D] MOL2 format, chain G [auth A] MOL2 format, chain K [auth C] MOL2 format, chain F [auth A] MOL2 format, chain H [auth A] MOL2 format, chain J [auth B] MOL2 format, chain M [auth C] MOL2 format, chain N [auth D] MOL2 format, chain P [auth D] mmCIF format, chain G [auth A] mmCIF format, chain K [auth C] mmCIF format, chain F [auth A] mmCIF format, chain H [auth A] mmCIF format, chain J [auth B] mmCIF format, chain M [auth C] mmCIF format, chain N [auth D] mmCIF format, chain P [auth D]	F [auth A] G [auth A] H [auth A] J [auth B] K [auth C] F [auth A], G [auth A], H [auth A], J [auth B], K [auth C], M [auth C], N [auth D], P [auth D]	OXALOACETATE ION C₄ H₃ O₅ KHPXUQMNIQBQEV-UHFFFAOYSA-M		Interactions Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain J [auth B] Focus chain K [auth C] Focus chain M [auth C] Focus chain N [auth D] Focus chain P [auth D] Interactions & Density Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain J [auth B] Focus chain K [auth C] Focus chain M [auth C] Focus chain N [auth D] Focus chain P [auth D]