Human leukocyte antigen B*07:02 in complex with SARS-CoV2 epitope SPRWYFYYL
Patskovska, L., Patskovsky, Y., Krogsgaard, M.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
HLA class I histocompatibility antigen, B-7 alpha chain | 275 | Homo sapiens | Mutation(s): 0  Gene Names: HLA-B, HLAB | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01889 (Homo sapiens) Explore P01889  Go to UniProtKB:  P01889 | |||||
PHAROS:  P01889 GTEx:  ENSG00000234745  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01889 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-2-microglobulin | 100 | Homo sapiens | Mutation(s): 0  Gene Names: B2M, CDABP0092, HDCMA22P | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61769 (Homo sapiens) Explore P61769  Go to UniProtKB:  P61769 | |||||
PHAROS:  P61769 GTEx:  ENSG00000166710  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P61769 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Nucleoprotein | 9 | Severe acute respiratory syndrome coronavirus 2 | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for P59595 (Severe acute respiratory syndrome coronavirus) Explore P59595  Go to UniProtKB:  P59595 | |||||
Entity Groups   | |||||
UniProt Group | P59595 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
P6G Query on P6G | D [auth A] | HEXAETHYLENE GLYCOL C12 H26 O7 IIRDTKBZINWQAW-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 71.723 | α = 90 |
b = 155.172 | β = 90 |
c = 88.165 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
PDB_EXTRACT | data extraction |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Cancer Institute (NIH/NCI) | United States | CA243486-01A1 |