B-FACTOR ANALYSIS SUGGEST THAT L-LYSINE AND R, R-BISLYSINE ALLOSTERICALLY INHIBIT Cj.DHDPS ENZYME BY DECREASING PROTEIN DYNAMICS.
Saran, S., Sanders, D.A.R.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
4-hydroxy-tetrahydrodipicolinate synthase | 310 | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 | Mutation(s): 0  Gene Names: dapA, Cj0806 EC: 4.3.3.7 | ||
UniProt | |||||
Find proteins for Q9PPB4 (Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)) Explore Q9PPB4  Go to UniProtKB:  Q9PPB4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9PPB4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
3VN (Subject of Investigation/LOI) Query on 3VN | G [auth A], LA [auth E], U [auth C] | (2R,5R)-2,5-diamino-2,5-bis(4-aminobutyl)hexanedioic acid C14 H30 N4 O4 XYUHPPVEDOOPDE-ZIAGYGMSSA-N | |||
PGE (Subject of Investigation/LOI) Query on PGE | FA [auth D] J [auth A] MA [auth E] N [auth B] SA [auth F] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N | |||
PEG (Subject of Investigation/LOI) Query on PEG | JA [auth D], KA [auth D], L [auth A], PA [auth E], YA [auth F] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
EDO (Subject of Investigation/LOI) Query on EDO | AA [auth C] BA [auth C] HA [auth D] IA [auth D] OA [auth E] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
ACT (Subject of Investigation/LOI) Query on ACT | GA [auth D] K [auth A] NA [auth E] O [auth B] P [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
MG (Subject of Investigation/LOI) Query on MG | CA [auth D] DA [auth D] EA [auth D] H [auth A] I [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
KPI Query on KPI | A, B, C, D, E A, B, C, D, E, F | L-PEPTIDE LINKING | C9 H16 N2 O4 | LYS |
Length ( Å ) | Angle ( ˚ ) |
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a = 85.09 | α = 90 |
b = 231.56 | β = 90 |
c = 198.62 | γ = 90 |
Software Name | Purpose |
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XSCALE | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
HKL-3000 | data reduction |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
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Natural Sciences and Engineering Research Council (NSERC, Canada) | Canada | -- |