7KOH

Crystal structure of antigen 43 from Escherichia coli EDL933


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.208 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Variation of Antigen 43 self-association modulates bacterial compacting within aggregates and biofilms.

Vo, J.L.Ortiz, G.C.M.Totsika, M.Lo, A.W.Hancock, S.J.Whitten, A.E.Hor, L.Peters, K.M.Ageorges, V.Caccia, N.Desvaux, M.Schembri, M.A.Paxman, J.J.Heras, B.

(2022) NPJ Biofilms Microbiomes 8: 20-20

  • DOI: https://doi.org/10.1038/s41522-022-00284-1
  • Primary Citation of Related Structures:  
    7KO9, 7KOB, 7KOH

  • PubMed Abstract: 

    The formation of aggregates and biofilms enhances bacterial colonisation and infection progression by affording protection from antibiotics and host immune factors. Despite these advantages there is a trade-off, whereby bacterial dissemination is reduced. As such, biofilm development needs to be controlled to suit adaptation to different environments. Here we investigate members from one of largest groups of bacterial adhesins, the autotransporters, for their critical role in the assembly of bacterial aggregates and biofilms. We describe the structural and functional characterisation of autotransporter Ag43 variants from different Escherichia coli pathotypes. We show that specific interactions between amino acids on the contacting interfaces of adjacent Ag43 proteins drives a common mode of trans-association that leads to cell clumping. Furthermore, subtle variation of these interactions alters aggregation kinetics and the degree of compacting within cell clusters. Together, our structure-function investigation reveals an underlying molecular basis for variations in the density of bacterial communities.


  • Organizational Affiliation

    Department of Biochemistry and Chemistry, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, VIC, 3086, Australia.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Antigen 43
A, B, C, D
565Escherichia coli O157:H7Mutation(s): 0 
Gene Names: Z1211Z1651
UniProt
Find proteins for Q8X9L4 (Escherichia coli O157:H7)
Explore Q8X9L4 
Go to UniProtKB:  Q8X9L4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8X9L4
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 6 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
P6G
Query on P6G

Download Ideal Coordinates CCD File 
CA [auth B]
DA [auth B]
FB [auth D]
H [auth A]
HB [auth D]
CA [auth B],
DA [auth B],
FB [auth D],
H [auth A],
HB [auth D],
I [auth A],
K [auth A],
L [auth A],
LA [auth C],
M [auth A],
OA [auth C],
PA [auth C],
QA [auth C],
XA [auth D],
Z [auth B]
HEXAETHYLENE GLYCOL
C12 H26 O7
IIRDTKBZINWQAW-UHFFFAOYSA-N
PEG
Query on PEG

Download Ideal Coordinates CCD File 
AA [auth B]
AB [auth D]
BA [auth B]
BB [auth D]
CB [auth D]
AA [auth B],
AB [auth D],
BA [auth B],
BB [auth D],
CB [auth D],
DB [auth D],
E [auth A],
EB [auth D],
F [auth A],
G [auth A],
GB [auth D],
IB [auth D],
J [auth A],
JB [auth D],
MA [auth C],
N [auth A],
NA [auth C],
RA [auth C],
T [auth B],
U [auth B],
V [auth B],
W [auth B],
WA [auth D],
X [auth B],
Y [auth B],
YA [auth D],
ZA [auth D]
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
SO4
Query on SO4

Download Ideal Coordinates CCD File 
OB [auth D]SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
GOL
Query on GOL

Download Ideal Coordinates CCD File 
EA [auth B]
FA [auth B]
GA [auth B]
HA [auth B]
IA [auth B]
EA [auth B],
FA [auth B],
GA [auth B],
HA [auth B],
IA [auth B],
JA [auth B],
KA [auth B],
KB [auth D],
LB [auth D],
MB [auth D],
NB [auth D],
O [auth A],
P [auth A],
Q [auth A],
R [auth A],
SA [auth C],
TA [auth C]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
CL
Query on CL

Download Ideal Coordinates CCD File 
UA [auth C]CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
MG
Query on MG

Download Ideal Coordinates CCD File 
PB [auth D],
S [auth A],
VA [auth C]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.208 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 97.55α = 90
b = 178.66β = 90
c = 246.23γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction
iMOSFLMdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Australian Research Council (ARC)Australia180102987
Australian Research Council (ARC)Australia150102287
National Health and Medical Research Council (NHMRC, Australia)Australia1143638

Revision History  (Full details and data files)

  • Version 1.0: 2022-03-09
    Type: Initial release
  • Version 1.1: 2023-03-22
    Changes: Database references
  • Version 1.2: 2023-10-25
    Changes: Data collection, Refinement description