7KDS

Crystal structure of Acetyl-CoA synthetase 2 in complex with Adenosine-5'-propylphosphate from Candida albicans

• PDB DOI: https://doi.org/10.2210/pdb7KDS/pdb

• Classification: LIGASE
• Organism(s): Candida albicans SC5314
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2020-10-09 Released: 2020-11-11 
• Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free: 0.267 
• R-Value Work: 0.232 
• R-Value Observed: 0.235 

Starting Model: experimental

Literature

Crystal structure of Acetyl-CoA synthetase 2 in complex with Adenosine-5'-propylphosphate from Candida albicans

Abendroth, J., Fox III, D., DeBouver, N.D., Krysan, D.J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 76.32 kDa 
• Atom Count: 4,832 
• Modelled Residue Count: 654 
• Deposited Residue Count: 686 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acetyl-coenzyme A synthetase 2	A	686	Candida albicans SC5314	Mutation(s): 1  Gene Names: ACS2, CAALFM_C104290CA, CaO19.1064, CaO19.8666 EC: 6.2.1.1
UniProt
Find proteins for Q8NJN3 (Candida albicans (strain SC5314 / ATCC MYA-2876)) Explore Q8NJN3  Go to UniProtKB:  Q8NJN3

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PRX (Subject of Investigation/LOI)	B [auth A]	ADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER C13 H20 N5 O7 P XAMXMSZRQHPMRX-QYVSTXNMSA-N
NA	C [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free: 0.267 
• R-Value Work: 0.232 
• R-Value Observed: 0.235 
• Space Group: P 4₁ 3 2
• Diffraction Data: https://doi.org/10.18430/m37kds

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 166.92	α = 90
b = 166.92	β = 90
c = 166.92	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2020-11-11 
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History  

• Version 1.0: 2020-11-11
  Type: Initial release
  
• Version 1.1: 2023-10-18
  Changes: Data collection, Database references, Refinement description