7JU1 | pdb_00007ju1

The FARFAR-NMR Ensemble of 29-mer HIV-1 Trans-activation Response Element RNA (N=20)

PDB DOI: https://doi.org/10.2210/pdb7JU1/pdb
BMRB: 30788
NAKB: 7JU1

Classification: RNA
Organism(s): Human immunodeficiency virus 1
Mutation(s): No

Deposited: 2020-08-18 Released: 2020-10-07
Deposition Author(s): Shi, H., Rangadurai, A., Roy, R., Yesselman, J.D., Al-Hashimi, H.M.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 20
Conformers Submitted: 20
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

Validation slider image for 7JU1

This is version 1.3 of the entry. See complete history.

Literature

Rapid and accurate determination of atomistic RNA dynamic ensemble models using NMR and structure prediction

Shi, H., Rangadurai, A., Abou-Assi, H., Roy, R., Case, D.A., Herschlag, D., Yesselman, J.D., Al-Hashimi, H.M.

(2020) Nat Commun 11: 5531

DOI: https://doi.org/10.1038/s41467-020-19371-y

Macromolecule Content

Total Structure Weight: 9.31 kDa
Atom Count: 614
Modeled Residue Count: 29
Deposited Residue Count: 29
Unique nucleic acid chains: 1

Macromolecules

Find similar nucleic acids by:

(by identity cutoff)

Molecule	Chains	Length	Organism	Image
Entity ID: 1
RNA (29-MER)	A [auth X]	29	Human immunodeficiency virus 1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 20
Conformers Submitted: 20
Selection Criteria: target function

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-10-07

Deposition Author(s):

Yesselman, J.D.

Al-Hashimi, H.M.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	1R01GM132899
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	U54 AI150470

Revision History (Full details and data files)

Version 1.0: 2020-10-07
Type: Initial release
Version 1.1: 2020-11-11
Changes: Database references
Version 1.2: 2023-06-14
Changes: Database references, Other
Version 1.3: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.