7JR3 | pdb_00007jr3

SARS-CoV-2 3CL protease crystallized under reducing conditions

• PDB DOI: https://doi.org/10.2210/pdb7JR3/pdb

• Classification: HYDROLASE
• Organism(s): Severe acute respiratory syndrome coronavirus 2
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2020-08-11 Released: 2020-08-26 
• Deposition Author(s): de Oliveira, R.R., Nascimento, A.F.Z., Zeri, A.C.M., Trivella, D.B.B.
• Funding Organization(s): FINEP

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.55 Å
• R-Value Free: 
  0.183 (Depositor), 0.180 (DCC) 
• R-Value Work: 
  0.159 (Depositor), 0.160 (DCC) 
• R-Value Observed: 
  0.160 (Depositor) 

Starting Model: experimental

Literature

SARS-CoV-2 3CL protease crystallized under reducing conditions.

de Oliveira, R.R., Nascimento, A.F.Z., Zeri, A.C.M., Trivella, D.B.B.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 33.83 kDa 
• Atom Count: 2,747 
• Modeled Residue Count: 300 
• Deposited Residue Count: 306 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3C-like proteinase	A	306	Severe acute respiratory syndrome coronavirus 2	Mutation(s): 0  Gene Names: rep, 1a-1b EC: 3.4.22.69
UniProt
Find proteins for P0DTD1 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTD1  Go to UniProtKB:  P0DTD1

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.55 Å
• R-Value Free:  0.183 (Depositor), 0.180 (DCC) 
• R-Value Work:  0.159 (Depositor), 0.160 (DCC) 
• R-Value Observed: 0.160 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 98.995	α = 90
b = 80.99	β = 114.76
c = 51.743	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-08-26 
Deposition Author(s): de Oliveira, R.R., Nascimento, A.F.Z., Zeri, A.C.M., Trivella, D.B.B.

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Funding Organization	Location	Grant Number
FINEP	Brazil	01.20.0003.00

Revision History  

• Version 1.0: 2020-08-26
  Type: Initial release
  
• Version 1.1: 2023-07-19
  Changes: Data collection, Database references
• Version 1.2: 2023-10-25
  Changes: Data collection, Refinement description