7JHY

Type IV-B CRISPR Complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of a type IV CRISPR-Cas ribonucleoprotein complex.

Zhou, Y.Bravo, J.P.K.Taylor, H.N.Steens, J.A.Jackson, R.N.Staals, R.H.J.Taylor, D.W.

(2021) iScience 24: 102201-102201

  • DOI: https://doi.org/10.1016/j.isci.2021.102201
  • Primary Citation of Related Structures:  
    7JHY

  • PubMed Abstract: 

    We reveal the cryo-electron microscopy structure of a type IV-B CRISPR ribonucleoprotein (RNP) complex (Csf) at 3.9-Å resolution. The complex best resembles the type III-A CRISPR Csm effector complex, consisting of a Cas7-like (Csf2) filament intertwined with a small subunit (Cas11) filament, but the complex lacks subunits for RNA processing and target DNA cleavage. Surprisingly, instead of assembling around a CRISPR-derived RNA (crRNA), the complex assembles upon heterogeneous RNA of a regular length arranged in a pseudo-A-form configuration. These findings provide a high-resolution glimpse into the assembly and function of enigmatic type IV CRISPR systems, expanding our understanding of class I CRISPR-Cas system architecture, and suggesting a function for type IV-B RNPs that may be distinct from other class 1 CRISPR-associated systems.


  • Organizational Affiliation

    Department of Molecular Biosciences, University of Texas at Austin, Austin, TX, USA.


Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Csf2 (Cas7)300Mycobacterium sp. JS623Mutation(s): 0 
Gene Names: Mycsm_07113
UniProt
Find proteins for L0J6R6 (Mycobacterium sp. JS623)
Explore L0J6R6 
Go to UniProtKB:  L0J6R6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupL0J6R6
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Csf4 (Cas11)H [auth h],
I [auth g],
J [auth j],
K [auth k],
L [auth i]
162Mycobacterium sp. JS623Mutation(s): 0 
Gene Names: Mycsm_07114
UniProt
Find proteins for L0JA79 (Mycobacterium sp. JS623)
Explore L0JA79 
Go to UniProtKB:  L0JA79
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupL0JA79
Sequence Annotations
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  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains LengthOrganismImage
RNA (31-MER)G [auth z]31Mycobacterium sp. JS623
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Welch FoundationUnited StatesF-1938
Cancer Prevention and Research Institute of Texas (CPRIT)United StatesRR160088

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-31
    Type: Initial release
  • Version 1.1: 2024-03-06
    Changes: Data collection, Database references