SDCBP PanDDA analysis group deposition
Bradshaw, W.J., Katis, V.L., Bountra, C., von Delft, F., Brennan, P.E.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Syntenin-1 | 195 | Homo sapiens | Mutation(s): 0  Gene Names: SDCBP, MDA9, SYCL | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O00560 (Homo sapiens) Explore O00560  Go to UniProtKB:  O00560 | |||||
PHAROS:  O00560 GTEx:  ENSG00000137575  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O00560 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
LJA (Subject of Investigation/LOI) Query on LJA | N [auth D] | N-[3-(carbamoylamino)phenyl]acetamide C9 H11 N3 O2 GVNXANNAMKHSRF-UHFFFAOYSA-N | |||
DGL Query on DGL | I [auth B], T [auth D] | D-GLUTAMIC ACID C5 H9 N O4 WHUUTDBJXJRKMK-GSVOUGTGSA-N | |||
SO4 Query on SO4 | R [auth D], S [auth D] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GLY Query on GLY | M [auth C], U [auth D], V [auth D] | GLYCINE C2 H5 N O2 DHMQDGOQFOQNFH-UHFFFAOYSA-N | |||
EDO Query on EDO | E [auth A] F [auth B] G [auth B] H [auth B] J [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 80.196 | α = 90 |
b = 49.629 | β = 95.12 |
c = 115.39 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
Aimless | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
REFMAC | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute on Aging (NIH/NIA) | United States | 5U54AG065187-03 |