7FIF

Cryo-EM structure of the hedgehog release protein Disp from water bear (Hypsibius dujardini)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Architecture of Dispatched, a Transmembrane Protein Responsible for Hedgehog Release.

Luo, Y.Wan, G.Zhou, X.Wang, Q.Zhang, Y.Bao, J.Cong, Y.Zhao, Y.Li, D.

(2021) Front Mol Biosci 8: 701826-701826

  • DOI: https://doi.org/10.3389/fmolb.2021.701826
  • Primary Citation of Related Structures:  
    7FIF

  • PubMed Abstract: 

    The evolutionarily conserved Hedgehog (Hh) signaling pathway is crucial for programmed cell differentiation and proliferation. Dispatched (Disp) is a 12-transmembrane protein that plays a critical role in the Hedgehog (Hh) signaling pathway by releasing the dually lipidated ligand HhN from the membrane, a prerequisite step to the downstream signaling cascade. In this study, we focus on the Disp from water bear, a primitive animal known as the most indestructible on Earth. Using a zebrafish model, we show that the water bear homolog possesses the function of Disp. We have solved its structure to a 6.5-Å resolution using single-particle cryogenic electron microscopy. Consistent with the evolutional conservation of the pathway, the water bear Disp structure is overall similar to the previously reported structures of the fruit fly and human homologs. Although not revealing much detail at this resolution, the water bear Disp shows a different conformation compared to published structures, suggesting that they represent different functional snapshots.


  • Organizational Affiliation

    CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein dispatched-like protein 11,118Hypsibius dujardiniMutation(s): 0 
Gene Names: BV898_06340
Membrane Entity: Yes 
UniProt
Find proteins for A0A1W0WWK2 (Hypsibius exemplaris)
Explore A0A1W0WWK2 
Go to UniProtKB:  A0A1W0WWK2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1W0WWK2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Chinese Academy of SciencesChinaXDB37020204
Chinese Academy of SciencesChinaXDB19020100
Chinese Academy of SciencesChinaQYZDB SSW SMC037
National Natural Science Foundation of China (NSFC)China31870726
National Natural Science Foundation of China (NSFC)China31630047
National Natural Science Foundation of China (NSFC)China31771610

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-08
    Type: Initial release
  • Version 1.1: 2022-02-16
    Changes: Database references
  • Version 1.2: 2024-06-12
    Changes: Data collection, Refinement description