Inhibitory mechanism of gold analogues against Pseudomonas global virulence factor regulator Vfr
Chew, B.L.A., Luo, D., Yang, L.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
cAMP-activated global transcriptional regulator Vfr | 210 | Pseudomonas aeruginosa PAO1 | Mutation(s): 0  Gene Names: vfr, PA0652 | ||
UniProt | |||||
Find proteins for P55222 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore P55222  Go to UniProtKB:  P55222 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P55222 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CMP (Subject of Investigation/LOI) Query on CMP | AB [auth G] HA [auth D] HB [auth H] I [auth A] OA [auth E] | ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE C10 H12 N5 O6 P IVOMOUWHDPKRLL-KQYNXXCUSA-N | |||
AU (Subject of Investigation/LOI) Query on AU | AA [auth C] BA [auth C] CA [auth C] CB [auth G] DA [auth C] | GOLD ION Au ZBKIUFWVEIBQRT-UHFFFAOYSA-N | |||
SO4 Query on SO4 | BB [auth G], PA [auth E], Z [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
CL (Subject of Investigation/LOI) Query on CL | FA [auth C] FB [auth G] GA [auth C] GB [auth G] LB [auth H] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 49.738 | α = 79.039 |
b = 87.615 | β = 77.872 |
c = 104.973 | γ = 75.402 |
Software Name | Purpose |
---|---|
Coot | model building |
PHENIX | refinement |
HKL-3000 | data reduction |
Aimless | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Ministry of Education (MoE, Singapore) | Singapore | 2016-T2-2-097 |