Bifunctional xylosidase/glucosidase LXYL with intermediate substrate xylose
Gong, W.M., Yang, L.Y.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-D-xylosidase/beta-D-glucosidase | 805 | Lentinula edodes | Mutation(s): 1  Gene Names: Lxyl-p1-2 | ![]() | |
UniProt | |||||
Find proteins for G8GLP2 (Lentinula edodes) Explore G8GLP2  Go to UniProtKB:  G8GLP2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G8GLP2 | ||||
Glycosylation | |||||
Glycosylation Sites: 7 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | G, J, M, P, S G, J, M, P, S, V | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G15407YE GlyCosmos:  G15407YE GlyGen:  G15407YE |
Entity ID: 3 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-2)-beta-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | H, N, T, W | 7 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G90815BM GlyCosmos:  G90815BM GlyGen:  G90815BM |
Entity ID: 4 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | I, R | 5 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G75436UI GlyCosmos:  G75436UI GlyGen:  G75436UI |
Entity ID: 6 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | L, O, U, X | 6 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G60005GQ GlyCosmos:  G60005GQ GlyGen:  G60005GQ |
Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | AA [auth A] BA [auth A] EA [auth B] FA [auth B] GA [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
BMA Query on BMA | DA [auth A] | beta-D-mannopyranose C6 H12 O6 WQZGKKKJIJFFOK-RWOPYEJCSA-N | |||
XYL (Subject of Investigation/LOI) Query on XYL | MA [auth C], SA [auth D], WA [auth E] | Xylitol C5 H12 O5 HEBKCHPVOIAQTA-SCDXWVJYSA-N | |||
XYZ (Subject of Investigation/LOI) Query on XYZ | CA [auth A], HA [auth B] | beta-D-xylofuranose C5 H10 O5 HMFHBZSHGGEWLO-KKQCNMDGSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 149.145 | α = 90 |
b = 258.225 | β = 90 |
c = 320.248 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Natural Science Foundation of China (NSFC) | China | 31270796 |