7EK2

Cryo-EM structure of VCCN1 in lipid nanodisc


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM structures of thylakoid-located voltage-dependent chloride channel VCCN1.

Hagino, T.Kato, T.Kasuya, G.Kobayashi, K.Kusakizako, T.Hamamoto, S.Sobajima, T.Fujiwara, Y.Yamashita, K.Kawasaki, H.Maturana, A.D.Nishizawa, T.Nureki, O.

(2022) Nat Commun 13: 2505-2505

  • DOI: https://doi.org/10.1038/s41467-022-30292-w
  • Primary Citation of Related Structures:  
    7EK1, 7EK2, 7EK3

  • PubMed Abstract: 

    In the light reaction of plant photosynthesis, modulation of electron transport chain reactions is important to maintain the efficiency of photosynthesis under a broad range of light intensities. VCCN1 was recently identified as a voltage-gated chloride channel residing in the thylakoid membrane, where it plays a key role in photoreaction tuning to avoid the generation of reactive oxygen species (ROS). Here, we present the cryo-EM structures of Malus domestica VCCN1 (MdVCCN1) in nanodiscs and detergent at 2.7 Å and 3.0 Å resolutions, respectively, and the structure-based electrophysiological analyses. VCCN1 structurally resembles its animal homolog, bestrophin, a Ca 2+ -gated anion channel. However, unlike bestrophin channels, VCCN1 lacks the Ca 2+ -binding motif but instead contains an N-terminal charged helix that is anchored to the lipid membrane through an additional amphipathic helix. Electrophysiological experiments demonstrate that these structural elements are essential for the channel activity, thus revealing the distinct activation mechanism of VCCN1.


  • Organizational Affiliation

    Department of Biological Science, Graduate School of Science, The University of Tokyo, Tokyo, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Bestrophin-like protein372Malus domesticaMutation(s): 0 
Gene Names: DVH24_014265
Membrane Entity: Yes 
UniProt
Find proteins for A0A498JCY7 (Malus domestica)
Explore A0A498JCY7 
Go to UniProtKB:  A0A498JCY7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A498JCY7
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2022-04-06
    Type: Initial release
  • Version 1.1: 2022-05-18
    Changes: Database references