7E9D | pdb_00007e9d

H102A mutant of IRG1 from bacillus

PDB DOI: https://doi.org/10.2210/pdb7E9D/pdb

Classification: IMMUNE SYSTEM
Organism(s): Bacillus subtilis
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2021-03-04 Released: 2021-03-31
Deposition Author(s): Park, H.H., Park, H.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.89 Å
R-Value Free:
0.202 (Depositor), 0.203 (DCC)
R-Value Work:
0.172 (Depositor), 0.173 (DCC)
R-Value Observed:
0.173 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

H102A mutant of IRG1 from bacillus

Park, H.H., Park, H.H.

To be published.

Macromolecule Content

Total Structure Weight: 97.66 kDa
Atom Count: 7,451
Modeled Residue Count: 886
Deposited Residue Count: 906
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
IRG1	A, B	453	Bacillus subtilis	Mutation(s): 0
UniProt
Find proteins for P54956 (Bacillus subtilis (strain 168)) Explore P54956 Go to UniProtKB: P54956
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P54956
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.89 Å
R-Value Free: 0.202 (Depositor), 0.203 (DCC)
R-Value Work: 0.172 (Depositor), 0.173 (DCC)
R-Value Observed: 0.173 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.911	α = 90
b = 110.779	β = 90
c = 168.564	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2021-03-31

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-03-31
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.