7E3Y | pdb_00007e3y

Crystal structure of serine acetyltransferase from Salmonella typhimurium complexed with cysteine

PDB DOI: https://doi.org/10.2210/pdb7E3Y/pdb

Classification: TRANSFERASE
Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-02-09 Released: 2022-02-16
Deposition Author(s): Momitani, K., Shiba, T., Sawa, T., Ono, K., Hurukawa, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.189 (Depositor), 0.204 (DCC)
R-Value Work:
0.171 (Depositor)
R-Value Observed:
0.172 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of serine acetyltransferase from Salmonella typhimurium

Momitani, K., Shiba, T., Sawa, T., Ono, K., Hurukawa, S.

To be published.

Macromolecule Content

Total Structure Weight: 91.47 kDa
Atom Count: 6,021
Modeled Residue Count: 771
Deposited Residue Count: 843
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine acetyltransferase	A, B, C	281	Salmonella enterica subsp. enterica serovar Typhimurium	Mutation(s): 0 Gene Names: cysE, cysE_2, A3104_05010, A3S30_03325, A3T81_03865, A3U32_05910, A3V03_14155, A3V89_00605, A3W57_03750, A3W75_06805... cysE, cysE_2, A3104_05010, A3S30_03325, A3T81_03865, A3U32_05910, A3V03_14155, A3V89_00605, A3W57_03750, A3W75_06805, A3X15_00605, A3X55_00080, A3Y76_07725, A4N07_07765, A4O05_19775, A4O41_01790, A4R48_08690, A6D61_11790, AAA76_11610, AAB27_17455, AAB79_19720, AAC35_03385, ADQ28_09935, AF497_17930, AGM99_05360, AHN93_11890, AKH62_19345, AL144_08155, AL184_10015, AQ530_12860, AU613_13940, AVA38_11285, AVC05_03655, AVL16_07290, AWT30_08190, AXX99_15290, B1265_05120, B1398_09425, B1642_06975, B1P38_09830, B2E31_11880, B4V59_11595, B4W90_05495, B6362_02975, B7Q27_05115, B8Y16_03260, B8Z46_05940, B9C90_02855, B9C96_10315, B9M14_04925, B9O84_11950, BBQ66_14075, BIC00_08425, BIC13_02980, BK110_05315, BMS46_12410, BMU56_14195, BZ203_17890, BZZ88_00085, C5W43_16620, CA117_16150, CB102_05545, CB119_09360, CB198_17655, CB380_03895, CB535_00535, CB570_01590, CB646_00635, CBM67_04090, CBM76_13420, CBZ90_18180, CC339_16980, CC403_03935, CC453_00590, CC652_10560, CC971_08005, CCP17_05370, CDZ72_00595, CE70_05120, CED07_09290, CEQ70_11555, CFF58_15825, CFF59_21655, CHN22_12630, CIX60_11455, CPS79_04380, CQO33_02455, CSG22_16060, CVR97_16460, D4361_00625, D4387_02705, D4422_07755, D5823_17275, D5N86_07340, D5N95_00625, D5O82_09835, D5P17_09450, D5X47_03495, D5Y28_11620, D6422_07495, D6J79_02960, D8S24_00615, DD95_17050, DLB93_00625, DLR28_04410, DMI89_02470, DMO92_11510, DN165_05750, DNB97_11225, DNM27_07805, DNZ37_00625, DO533_17560, DP680_00625, DPB42_19835, DPD91_15055, DPF41_12545, DPF68_06335, DPS76_06820, DQD22_05835, DQR44_03500, DRM14_09405, DRR75_03105, DRT38_09905, DRT61_17240, DRV05_06840, DSF94_02935, DSG41_06155, DTF68_09510, DU071_11515, DU223_00560, DU657_09035, DU879_06680, DUV75_05150, DWU22_22860, DY580_11620, DYM27_08180, E0935_00610, E1A11_05640, E6W45_05260, EBD14_00615, EBK21_06025, EC404_07825, EEQ30_12730, EER35_03800, EHB09_10780, EL822_05165, ELS01_06130, EPB30_05915, EQG93_08200, EVY71_04300, EW905_00545, F0D96_11380, F2P00_06975, F3Q97_08320, F3R12_09715, F9G02_14295, F9O44_21530, FE758_20235, FEM52_11865, FGZ46_07805, FJM64_04730, FQC24_04900, G0038_06275, G0040_06595, G0042_11960, G0045_10175, G0047_05335, G0048_08845, G0051_05405, G0052_10600, G0059_05680, G0061_07930, G0062_08515, G0063_08400, G0067_09010, G0069_08585, G0070_07605, G0071_06945, G0072_14235, G0074_09985, G0076_07235, G0077_08775, G0080_10635, G0084_11395, G0086_10900, G0087_08845, G0088_07935, G0089_04955, G0090_03505, G0094_03735, G0100_14185, G0101_08035, G0102_07730, G0111_07360, G0113_08830, G0117_05565, G0123_08845, G0124_08575, G0148_07605, G0157_08260, G0170_09580, G0A05_13820, G0A28_16820, G0A32_13280, G0A39_15425, G0A43_20185, G0A44_17785, G0A46_16230, G0A50_13520, G0A51_13930, G0A52_15135, G0A53_12535, G0A58_12230, G0A60_12345, G0A61_12540, G0A63_11210, G0A66_13595, G0A67_22900, G0A70_12830, G0A73_17680, G0A76_09175, G0A79_14675, G0A88_05965, G0A92_06340, G0A96_05835, G0A97_12940, G0B03_06110, G0B05_02565, G0B07_02470, G0B08_03555, G0B12_00625, G0B96_06080, G0C03_02935, G0C04_06935, G0C34_08310, G0E15_12670, G0E20_13550, G0G84_08315, G0J24_04810, G0J26_08215, G0J27_13950, G0J28_05985, G0J31_03395, G0J33_04480, G0J34_09260, G0J36_06285, G0J37_09000, G0J40_07825, G0J43_04945, G0J44_09115, G0J45_06250, G0J46_06760, G0J47_08880, G0J49_07020, G0J50_09720, G0J51_07860, G0J53_02990, G0J55_05700, G0J58_03985, G0J59_16225, G0J62_15765, G0J65_11480, G0J66_02655, G0J67_05850, G0J69_02785, G0J71_02785, G0J73_12020, G0J76_02795, G0J79_08750, G0J81_05475, G0J82_07100, G0J85_05475, G0J89_11950, G0J92_11195, G0J94_12360, G0J96_10765, G0J97_15330, G0K00_17750, G0K02_08035, G0K03_06615, G0K04_18390, G0K05_22305, G0K07_02785, G0K10_07210, G0K13_05890, G0K15_04425, G0K16_11135, G0K18_14730, G0K19_03405, G0K20_00930, G0K23_06605, G0K25_00615, G0K26_09240, G0K28_12020, G0K30_06005, G0K31_02600, G0K32_20425, G0K33_05385, G0K37_00615, G0K38_10155, G0K39_00090, G0K41_19865, G0K42_08200, G0K44_09270, G0K46_05475, G0K47_18685, G0K48_11355, G0K49_12145, G0K52_13340, G0K53_13495, G0K56_11805, G0K58_10575, G0K59_12880, G0K61_08535, G0K65_06825, G0K68_04760, G0K70_16100, G0K72_03730, G0K74_20670, G0K75_06715, G0K78_17295, G0K80_13200, G0K83_05340, G0K84_13535, G0K85_10505, G0K88_002819, G0K89_003498, G0K90_000093, G0K94_002995, G0K95_000339, G0L00_000779, G0L02_000100, G0L03_16880, G0L06_01250, G0L07_01150, G0L10_19550, G0L14_03985, G0L15_16455, G0L18_02085, G0L19_18835, G0L20_10125, G0L24_13670, G0L25_22220, G0L29_22200, G0L31_11245, G0L32_09060, G0L34_21635, G0L35_22320, G0L36_21325, G0L37_21685, G0L38_21445, G0L40_16420, G0L42_19545, G0L48_20520, G0L49_19685, G0L51_15765, G0L52_21925, G0L55_15245, G0L59_23105, G0L62_16480, G0L63_14750, G0L65_23110, G0L67_22290, G0L68_14955, G0L70_08350, G0L73_13955, G0L76_22660, G0L77_11570, G0L78_15745, G0L79_12075, G0L83_21075, G0L86_003109, G0L88_16220, G0L89_22745, G0L91_15565, G0L93_19280, G0L96_03145, G0L98_19650, G0M00_23895, G0M05_22200, G0M06_004581, G0M10_05905, G0M13_004557, G0M14_22910, G0M16_01810, G0M18_003746, G0M21_21875, G0M22_004517, G0M25_004549, G0M26_23050, G0M27_17510, G0M28_13710, G0M29_004535, G0M30_23450, G0M33_09415, G0M35_12705, G0M36_23285, G0M38_22280, G0M39_09430, G0M41_10150, G0M45_10850, G0M46_002023, G0M48_002515, G0M53_10320, G0M55_14455, G0M56_24115, G0M58_25195, G0M63_15965, G0M65_15495, G0M67_11515, G0N45_04750, G0N48_08630, G0N51_12035, G0N53_03860, G0N55_07395, G0N57_03995, G0N58_04430, G0N59_10375, G0N60_09450, G0N61_05335, G0N62_04910, G0N64_07020, G0N65_05960, G0N66_09170, G0N67_07040, G0N71_08035, G0N75_10390, G0N78_06505, G0N82_06605, G0N84_07575, G0N85_03860, G0N86_11030, G0N88_07455, G0N89_06055, G0N90_07535, G0N92_16590, G0N94_07945, G0N95_15815, G0N98_20670, G0N99_03145, G0O00_03695, G0O03_07340, G0O10_06565, G0O14_22415, G0O15_13655, G0O18_14515, G0O19_09170, G0O20_06435, G0O22_05495, G0O25_08720, G0O27_07395, G0O31_07940, G0O32_05515, G0O36_06355, G0O37_08145, G0O39_05330, G0O40_13250, G0O41_07810, G0O42_07930, G0O43_08875, G0O44_05290, G0O47_08390, G0O52_07735, G0O55_07110, G0O57_07675, G0O58_09810, G0O59_14010, G0O60_09160, G0O63_04745, G0O66_13330, G0O68_07155, G0O70_08585, G0O71_08590, G0O74_07560, G0O75_07275, G0O77_08430, G0O78_08200, G0O80_07325, G0O81_03230, G0O82_10040, G0O84_08585, G0O85_05535, G0O86_10140, G0O87_07730, G0O88_03610, G0O89_05775, G0O92_08695, G0O93_04000, G0O94_13125, G0O97_02000, G0O99_13640, G0P00_14760, G0P01_18670, G0P02_06405, G0P05_12675, G0P06_08115, G0P08_08810, G0P12_13065, G0P13_05440, G0P17_06520, G0P18_07400, G0P19_05235, G0P24_21800, G0P26_08590, G0P28_08660, G0P30_08320, G0P31_10635, G0P36_13015, G0P37_01870, G0P41_15445, G0P44_03415, G0P45_06865, G0P48_07725, G0P49_00095, G0P52_05405, G0P53_00090, G0P56_09770, G0P57_08590, G0P58_04750, G0P63_20820, G0P65_04640, G0P67_09885, G0P68_07495, G0P69_00085, G0P73_13960, G0P75_01585, G0P76_03005, G1N61_05725, G1N64_05640, G1N66_05630, G1N68_05635, G1N71_05650, G1N72_05640, G1N86_05650, G1N87_05650, G1N91_06365, G1O00_02810, G1O02_05645, G1O04_05650, G1O05_05640, G1O08_05630, G1O10_07730, G1O12_05650, G1O16_05645, G1O17_05720, G1O18_05645, G1O20_05650, G1O23_05650, G1O25_05630, G1O26_05650, G1O27_05710, G1O28_05725, G1O29_05710, G1O32_05630, G1O34_05720, G1O38_06055, G1O40_05650, G1O43_05635, G1O46_02805, G1O48_05725, G1O49_05720, G1O51_05645, G1O53_05705, G1O62_05645, G1O63_05635, G1O65_05725, G1O67_07185, G1O68_05650, G1O69_05650, G1O71_08805, G1O72_05725, G1O76_05725, G1O77_05650, G1O80_05720, G1O81_05645, G1O83_05715, G1O84_05725, G1O87_05725, G1O88_05725, G1O89_05650, G1O90_05725, G1O93_05715, G1O94_05710, G1O96_05720, G1P02_05710, G1P03_05750, G1P06_05705, G1P09_03440, G1P10_05650, G1P12_05725, G1P14_00615, G1P15_07845, G1P17_05725, G1P19_05720, G1P23_05720, G1P24_05640, G1P25_05725, G1P26_05645, G1P29_05730, G1P31_05705, G1P35_05650, G1P36_05645, G1P37_05675, G1P40_02880, G1P44_05645, G1P45_05715, G1P47_05720, G1P48_05725, G1P51_05725, G1P52_05675, G1P53_05675, G1P54_05725, G1P55_05720, G1P56_05705, G1P57_05725, G1P58_05710, G1P59_05725, G1P61_08130, G1P64_05725, G1P67_05720, G1P69_05630, G1P72_13410, G1P75_05650, G1P76_05635, G1P78_03455, G1P83_03470, G1P84_05645, G1P87_05715, G1P90_05470, G1P91_05710, G1Q03_05645, G1Q08_04940, G1Q67_05715, G1Q78_05350, G1Q81_05720, G1Q83_05725, G1Q84_05380, G1Q85_05680, G1Q86_05635, G1Q88_02810, G1Q90_05710, G1Q91_05650, G1Q93_04705, G1Q96_05615, G1Q98_05650, G1Q99_05710, G1R01_05630, G1R02_02810, G1R03_05720, G1R04_05725, G1R08_05700, G1R13_05205, G1R15_04800, G1R20_03600, G1R21_05405, G1R22_02885, G1R23_03440, G1R27_05625, G1R28_05725, G1R29_05720, G1R30_05725, G1R31_05920, G1R36_05725, G1R38_05645, G1R40_02885, G1R42_02810, G1R44_05720, G1R45_07405, G1R47_03455, G1R48_12060, G1R51_05635, G1R53_05705, G1R63_05725, G1R69_00615, G1R87_03440, G1R93_05635, G1S02_05725, G2203_07765, G2212_09145, G2218_10300, G2221_14195, G2279_11805, G2290_12405, G2793_19520, G2918_13280, G2951_05970, G3221_002735, G3230_003661, G3231_002058, G3247_001662, G3248_001249, G3254_004653, G3263_002848, G3270_003483, G3275_000682, G3312_003008, G3336_001558, G3357_001614, G3369_004081, G3433_004108, G3460_000123, G3464_004578, G3593_001957, G3A35_05770, G3V06_000948, G3V14_003067, G3V17_000398, G3V21_003292, G3V56_000511, G3V57_001846, G3X03_001756, G4189_001013, G4190_000691, G4192_000764, G4198_000416, G4201_002053, G4202_001427, G4A01_003792, G4A73_001972, G4A83_004200, G4A85_000746, G4A87_001080, G4B68_002321, G4B72_002739, G4B74_000633, G4C74_000683, G4D32_002911, G4D46_002506, G4F88_00735, G4F89_00735, G4F91_00735, G4F92_00735, G4G47_002645, G4G62_000458, G4G67_002666, G4G68_004542, G4G75_001629, G4G76_001514, G4G79_002622, G4G97_002461, G4H00_000745, G4H04_004327, G4H07_002948, G4H08_004500, G4H18_000683, G4H21_000683, G4H24_000682, G4H63_001204, G4I66_003423, G4J07_001259, G4J08_002126, G4J11_000322, G4J12_004152, G4J18_001975, G4J20_003718, G4J37_004373, G4J39_002399, G4J41_003048, G4J45_002783, G4J90_001664, G4K02_004273, G4K03_000418, G4O54_000596, G4O56_001522, G4O59_000764, G4O60_000633, G4O67_000041, G4O69_001236, G4P29_001036, G4P83_001803, G4P85_000745, G4P89_004809, G4P91_001013, G4P93_003087, G4Q12_001877, G4Q28_000682, G4Q31_000680, G4Q50_002094, G4Q52_001753, G4Q59_002758, G4Q60_000745, G4Q63_002192, G4Q67_004686, G4Q94_004523, G4R01_000744, G4R15_002742, G4R16_000689, G4W68_002210, G4W73_000507, G4W86_000936, G4W87_000682, G4W88_000682, G4W91_000123, G4Y10_004041, G9269_000786, G9302_000745, G9304_001353, G9305_004644, G9309_002663, G9313_000745, G9314_001496, G9367_001426, G9381_000603, G9C24_000334, G9C41_000948, G9C46_000802, G9C47_000633, G9C49_001006, G9C57_000680, G9G03_000449, G9G04_003063, G9G34_003222, G9G36_000529, G9G45_003510, G9G50_002092, G9G62_002092, G9W19_001421, G9W28_001623, G9W45_000017, G9W52_003607, G9W63_003565, G9W65_000680, G9W79_002092, G9W95_000683, G9W96_002720, G9X40_003429, GB021_11805, GB040_12885, GB055_08210, GB076_09745, GB106_05695, GB114_08185, GB120_05320, GB122_13725, GB131_20140, GB139_06635, GB171_03895, GB209_07080, GB221_07630, GB224_01095, GB238_15545, GB280_05405, GB321_07280, GB331_06995, GB339_12970, GB342_04855, GB368_11975, GB372_06385, GB416_15230, GB452_13530, GB459_13980, GB466_11775, GB505_11655, GB510_13970, GB551_03965, GB567_11135, GB645_22820, GBS44_03685, GBS58_05785, GBV53_06255, GBV54_10700, GBV60_02695, GBW03_22605, GBW44_14690, GBW52_04290, GBW76_13525, GBX12_15580, GBX20_14710, GBX46_08050, GBX55_07405, GBX64_03720, GBY13_10985, GBY23_15105, GBY73_05835, GBZ51_22620, GBZ55_00335, GCZ80_14935, GEZ01_02745, GJE27_05415, GJE28_04290, GNA59_001887, GNA88_002670, GNA97_002817, GNA99_002384, GNB28_002467, GNB36_000576, GNB86_001140, GNC11_000679, GNC19_001022, GNC45_001117, GNC75_002181, GNC95_001257, GT380_05210, GTH60_03610, GTH62_23080, GTH63_08090, GTH66_08195, GTH67_12100, GTH68_08520, GTH70_15250, GTH72_08450, GTH73_05335, GTH75_06065, GTH77_01895, GTH78_08535, GTH79_23075, GTH81_13730, GTH85_08830, GTH87_09160, GTH89_15910, GTH90_13615, GTH91_19520, GTH93_08585, GTH94_05585, GTH99_10220, GXC51_05290, GXC56_05290, GXG40_05290, GYI58_10495, GYI62_000688, GYI77_08995, GYJ04_01855, GYJ24_05585, GYJ27_22050, GYJ28_001631, GYJ30_09795, GYJ32_11095, GYJ53_05720, GYJ59_05240, GYJ60_05710, H8S97_18910, KP44_05380, NG06_09070, R035_07705, SE14_03921, STMLT2P22_CBEKMEGD_04469, Z700_03325, ZV33_03350, ZX03_18590, ZY40_04845 EC: 2.3.1.30
UniProt
Find proteins for A0A0D6I3Y9 (Salmonella typhimurium) Explore A0A0D6I3Y9 Go to UniProtKB: A0A0D6I3Y9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0D6I3Y9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CYS (Subject of Investigation/LOI) Query on CYS Download:Ideal Coordinates CCD File SDF format, chain F [auth C] SDF format, chain E [auth B] SDF format, chain D [auth A] MOL2 format, chain F [auth C] MOL2 format, chain E [auth B] MOL2 format, chain D [auth A] mmCIF format, chain F [auth C] mmCIF format, chain E [auth B] mmCIF format, chain D [auth A]	D [auth A], E [auth B], F [auth C]	CYSTEINE C₃ H₇ N O₂ S XUJNEKJLAYXESH-REOHCLBHSA-N		Interactions Focus chain D [auth A] Focus chain E [auth B] Focus chain F [auth C] Interactions & Density Focus chain D [auth A] Focus chain E [auth B] Focus chain F [auth C]