7E0W | pdb_00007e0w

Crystal Structure of BCH domain from S. pombe

PDB DOI: https://doi.org/10.2210/pdb7E0W/pdb

Classification: LIPID BINDING PROTEIN
Organism(s): Schizosaccharomyces pombe 972h-
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-01-28 Released: 2021-03-31
Deposition Author(s): Chichili, V.P.R., Jobichen, C., Sivaraman, J.
Funding Organization(s): Ministry of Education (MoE, Singapore)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.260 (Depositor), 0.251 (DCC)
R-Value Work:
0.228 (Depositor), 0.220 (DCC)
R-Value Observed:
0.232 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 7E0W

This is version 1.1 of the entry. See complete history.

Literature

A novel intertwined anti-parallel dimeric structure of scaffold BCH domain regulates RhoA and RhoGAP functions

Chichili, V.P.R., Chew, T.W., Er, S.Y., Chin, C.F., Shankar, S., Jobichen, C., Pan, Q.C., Zhou, Y.T., Yeong, F.M., Low, B.C., Sivaraman, J.

(2021) Proc Natl Acad Sci U S A

Macromolecule Content

Total Structure Weight: 75.64 kDa
Atom Count: 4,908
Modeled Residue Count: 600
Deposited Residue Count: 636
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative Rho GTPase-activating protein C1565.02c	A, B, C, D	159	Schizosaccharomyces pombe 972h-	Mutation(s): 0 Gene Names: SPAC1565.02c
UniProt
Find proteins for Q9P3B1 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore Q9P3B1 Go to UniProtKB: Q9P3B1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9P3B1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PG4 Query on PG4 Download:Ideal Coordinates CCD File SDF format, chain H [auth D] SDF format, chain G [auth C] SDF format, chain F [auth B] SDF format, chain E [auth A] MOL2 format, chain H [auth D] MOL2 format, chain G [auth C] MOL2 format, chain F [auth B] MOL2 format, chain E [auth A] mmCIF format, chain H [auth D] mmCIF format, chain G [auth C] mmCIF format, chain F [auth B] mmCIF format, chain E [auth A]	E [auth A], F [auth B], G [auth C], H [auth D]	TETRAETHYLENE GLYCOL C₈ H₁₈ O₅ UWHCKJMYHZGTIT-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth D] Interactions & Density Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.260 (Depositor), 0.251 (DCC)
R-Value Work: 0.228 (Depositor), 0.220 (DCC)
R-Value Observed: 0.232 (Depositor)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 108.39	α = 90
b = 108.39	β = 90
c = 250.41	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-03-31

Deposition Author(s):

Chichili, V.P.R.

Funding Organization	Location	Grant Number
Ministry of Education (MoE, Singapore)	Singapore	R154-000-625-112

Revision History (Full details and data files)

Version 1.0: 2021-03-31
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references