7DST | pdb_00007dst

FMDV capsid in complex with M170 Nab

• PDB DOI: https://doi.org/10.2210/pdb7DST/pdb
• EM Map EMD-30845: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): Foot-and-mouth disease virus, Lama glama
• Expression System: Lama glama
• Mutation(s): No 


• Deposited: 2021-01-02 Released: 2021-03-10 
• Deposition Author(s): Dong, H., Liu, P.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.10 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural and molecular basis for foot-and-mouth disease virus neutralization by two potent protective antibodies.

Dong, H., Liu, P., Bai, M., Wang, K., Feng, R., Zhu, D., Sun, Y., Mu, S., Li, H., Harmsen, M., Sun, S., Wang, X., Guo, H.

(2022) Protein Cell 13: 446-453

• PubMed: 33599962 
• DOI: https://doi.org/10.1007/s13238-021-00828-9
• Primary Citation of Related Structures:  
  7DSS, 7DST

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Organizational Affiliation: 
• State Key Laboratory of Veterinary Etiological Biology and National Foot and Mouth Disease Reference Laboratory, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, 730046, China.
CAS Key Laboratory of Infection and Immunity, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, 100101, China.
University of Chinese Academy of Sciences, Beijing, 100049, China.
Division Virology, Wageningen Bioveterinary Research, P.O. Box 65, 8200 AB, Lelystad, The Netherlands.
State Key Laboratory of Veterinary Etiological Biology and National Foot and Mouth Disease Reference Laboratory, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, 730046, China. [e-mail].
CAS Key Laboratory of Infection and Immunity, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, 100101, China. [e-mail].
State Key Laboratory of Veterinary Etiological Biology and National Foot and Mouth Disease Reference Laboratory, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, 730046, China. [e-mail].

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Hetero 300-mer - A60B60C60D60E60 Pseudo Symmetry: Icosahedral - I  (Explore in 3D)
Pseudo Stoichiometry: Hetero 300-mer - A180B60C60 

Biological assembly 1 assigned by authors and generated by (software)

Macromolecule Content 

• Total Structure Weight: 90.6 kDa 
• Atom Count: 5,974 
• Modeled Residue Count: 772 
• Deposited Residue Count: 829 
• Unique protein chains: 5

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
VP1 of O type FMDV capsid	A	208	Foot-and-mouth disease virus	Mutation(s): 0
UniProt
Find proteins for F8UF79 (Foot-and-mouth disease virus serotype O) Explore F8UF79  Go to UniProtKB:  F8UF79

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
VP2 of O type FMDV capsid	B	206	Foot-and-mouth disease virus	Mutation(s): 0
UniProt
Find proteins for A0A1V1FWA8 (Foot-and-mouth disease virus serotype O) Explore A0A1V1FWA8  Go to UniProtKB:  A0A1V1FWA8

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
VP3 of O type FMDV capsid	C	219	Foot-and-mouth disease virus	Mutation(s): 0
UniProt
Find proteins for G8JKC1 (Foot-and-mouth disease virus serotype O) Explore G8JKC1  Go to UniProtKB:  G8JKC1

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
VP4 of O type FMDV capsid	D	75	Foot-and-mouth disease virus	Mutation(s): 0
UniProt
Find proteins for A0A0K0QSS3 (Foot-and-mouth disease virus serotype O) Explore A0A0K0QSS3  Go to UniProtKB:  A0A0K0QSS3

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
M170 Nab	E	121	Lama glama	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.10 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-03-10 
Deposition Author(s): Dong, H., Liu, P.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	No. 31941011, 12034006, 31672592, 31873023, 31811540395, 31772739, 315725153 and 1811540395

Revision History  

• Version 1.0: 2021-03-10
  Type: Initial release
  
• Version 1.1: 2022-05-25
  Changes: Database references, Derived calculations
• Version 1.2: 2024-11-13
  Changes: Data collection, Structure summary