7DL2

Cryo-EM structure of human TSC complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural insights into TSC complex assembly and GAP activity on Rheb.

Yang, H.Yu, Z.Chen, X.Li, J.Li, N.Cheng, J.Gao, N.Yuan, H.X.Ye, D.Guan, K.L.Xu, Y.

(2021) Nat Commun 12: 339-339

  • DOI: https://doi.org/10.1038/s41467-020-20522-4
  • Primary Citation of Related Structures:  
    7DL2

  • PubMed Abstract: 

    Tuberous sclerosis complex (TSC) integrates upstream stimuli and regulates cell growth by controlling the activity of mTORC1. TSC complex functions as a GTPase-activating protein (GAP) towards small GTPase Rheb and inhibits Rheb-mediated activation of mTORC1. Mutations in TSC genes cause tuberous sclerosis. In this study, the near-atomic resolution structure of human TSC complex reveals an arch-shaped architecture, with a 2:2:1 stoichiometry of TSC1, TSC2, and TBC1D7. This asymmetric complex consists of two interweaved TSC1 coiled-coil and one TBC1D7 that spans over the tail-to-tail TSC2 dimer. The two TSC2 GAP domains are symmetrically cradled within the core module formed by TSC2 dimerization domain and central coiled-coil of TSC1. Structural and biochemical analyses reveal TSC2 GAP-Rheb complimentary interactions and suggest a catalytic mechanism, by which an asparagine thumb (N1643) stabilizes γ-phosphate of GTP and accelerate GTP hydrolysis of Rheb. Our study reveals mechanisms of TSC complex assembly and GAP activity.


  • Organizational Affiliation

    Fudan University Shanghai Cancer Center, Institutes of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Shanghai Key Laboratory of Medical Epigenetics, Shanghai Medical College of Fudan University, Shanghai, 200032, China. yanghr@fudan.edu.cn.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
HamartinA [auth D],
D [auth C]
1,164Homo sapiensMutation(s): 0 
Gene Names: TSC1KIAA0243TSC
UniProt & NIH Common Fund Data Resources
Find proteins for Q92574 (Homo sapiens)
Go to UniProtKB:  Q92574
PHAROS:  Q92574
GTEx:  ENSG00000165699 
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 7 of TuberinB [auth A],
C [auth B]
1,692Homo sapiensMutation(s): 0 
Gene Names: TSC2TSC4
UniProt & NIH Common Fund Data Resources
Find proteins for P49815 (Homo sapiens)
Go to UniProtKB:  P49815
PHAROS:  P49815
GTEx:  ENSG00000103197 
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
TBC1 domain family member 7267Homo sapiensMutation(s): 0 
Gene Names: TBC1D7TBC7HSPC239
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P0N9 (Homo sapiens)
Go to UniProtKB:  Q9P0N9
PHAROS:  Q9P0N9
GTEx:  ENSG00000145979 
Sequence Annotations
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
unknown protein261Homo sapiensMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-16
    Type: Initial release
  • Version 1.1: 2021-01-27
    Changes: Database references
  • Version 1.2: 2024-03-27
    Changes: Data collection, Database references