Crystal structure of DsbA-like protein DR2335 from Deinococcus radiodurans R1, native protein
Kim, M.-K., Zhang, J., Zhao, L.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
DSBA domain-containing protein | 232 | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 | Mutation(s): 1  Gene Names: DR_2335 | ||
UniProt | |||||
Find proteins for Q9RRZ4 (Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)) Explore Q9RRZ4  Go to UniProtKB:  Q9RRZ4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9RRZ4 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
TRS Query on TRS | D [auth A], P [auth B] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O | |||
PEG Query on PEG | F [auth A], J [auth A], O [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
ACT Query on ACT | C [auth A] E [auth A] G [auth A] H [auth A] I [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 45.084 | α = 90 |
b = 84.177 | β = 91.54 |
c = 63.898 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
HKL-2000 | data scaling |
PDB_EXTRACT | data extraction |
HKL-2000 | data reduction |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
National Research Foundation (NRF, Korea) | Korea, Republic Of | NRF-2020R1F1A1057780 |