7D84

34-fold symmetry Salmonella S ring formed by full-length FliF


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Native flagellar MS ring is formed by 34 subunits with 23-fold and 11-fold subsymmetries.

Kawamoto, A.Miyata, T.Makino, F.Kinoshita, M.Minamino, T.Imada, K.Kato, T.Namba, K.

(2021) Nat Commun 12: 4223-4223

  • DOI: https://doi.org/10.1038/s41467-021-24507-9
  • Primary Citation of Related Structures:  
    7D84

  • PubMed Abstract: 

    The bacterial flagellar MS ring is a transmembrane complex acting as the core of the flagellar motor and template for flagellar assembly. The C ring attached to the MS ring is involved in torque generation and rotation switch, and a large symmetry mismatch between these two rings has been a long puzzle, especially with respect to their role in motor function. Here, using cryoEM structural analysis of the flagellar basal body and the MS ring formed by full-length FliF from Salmonella enterica, we show that the native MS ring is formed by 34 FliF subunits with no symmetry variation. Symmetry analysis of the C ring shows a variation with a peak at 34-fold, suggesting flexibility in C ring assembly. Finally, our data also indicate that FliF subunits assume two different conformations, contributing differentially to the inner and middle parts of the M ring and thus resulting in 23- and 11-fold subsymmetries in the inner and middle M ring, respectively. The internal core of the M ring, formed by 23 subunits, forms a hole of the right size to accommodate the protein export gate.


  • Organizational Affiliation

    Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar M-ring protein560Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
Gene Names: fliFfla AII.1fla BISTM1969
UniProt
Find proteins for P15928 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Explore P15928 
Go to UniProtKB:  P15928
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP15928
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC2.14
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)Japan25000013
Japan Society for the Promotion of Science (JSPS)Japan18K06155
Japan Society for the Promotion of Science (JSPS)Japan18K14639
Japan Society for the Promotion of Science (JSPS)Japan19H03182
Japan Society for the Promotion of Science (JSPS)Japan26293097
Japan Society for the Promotion of Science (JSPS)Japan15H05593
Japan Society for the Promotion of Science (JSPS)Japan20K15749
Japan Society for the Promotion of Science (JSPS)Japan15H02386
Japan Society for the Promotion of Science (JSPS)Japan15H01640
Japan Agency for Medical Research and Development (AMED)Japan19am0101117
Japan Agency for Medical Research and Development (AMED)Japan17pc0101020

Revision History  (Full details and data files)

  • Version 1.0: 2021-05-19
    Type: Initial release
  • Version 1.1: 2021-07-28
    Changes: Database references
  • Version 1.2: 2024-03-27
    Changes: Data collection, Database references