7D1I | pdb_00007d1i

Crystal structure of acinetobacter baumannii MurG

PDB DOI: https://doi.org/10.2210/pdb7D1I/pdb

Classification: TRANSFERASE
Organism(s): Acinetobacter baumannii
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-09-14 Released: 2021-07-14
Deposition Author(s): Park, H.H., Jeong, k.H.
Funding Organization(s): National Research Foundation (NRF, Korea)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.49 Å
R-Value Free:
0.298 (Depositor), 0.287 (DCC)
R-Value Work:
0.261 (Depositor), 0.252 (DCC)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Putative hexameric glycosyltransferase functional unit revealed by the crystal structure of Acinetobacter baumannii MurG

Jung, K.H., Kwon, S., Kim, C.M., Lee, J.H., Park, H.H.

(2021) IUCrJ 8: 574-583

DOI: https://doi.org/10.1107/S2052252521003729

Macromolecule Content

Total Structure Weight: 118.43 kDa
Atom Count: 7,702
Modeled Residue Count: 1,022
Deposited Residue Count: 1,095
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	A, B, C	365	Acinetobacter baumannii	Mutation(s): 0 Gene Names: murG, BGC29_11725 EC: 2.4.1.227
UniProt
Find proteins for A3M9Y1 (Acinetobacter baumannii (strain ATCC 17978 / DSM 105126 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)) Explore A3M9Y1 Go to UniProtKB: A3M9Y1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A3M9Y1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.49 Å
R-Value Free: 0.298 (Depositor), 0.287 (DCC)
R-Value Work: 0.261 (Depositor), 0.252 (DCC)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 182.909	α = 90
b = 182.909	β = 90
c = 156.549	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data collection
HKL-2000	data scaling
PHASER	phasing
Coot	model building

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-07-14

Deposition Author(s):

Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	--

Revision History (Full details and data files)

Version 1.0: 2021-07-14
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.