7D0J

Photosystem I-LHCI-LHCII of Chlamydomonas reinhardtii


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.42 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history


Literature

Structure of photosystem I-LHCI-LHCII from the green alga Chlamydomonas reinhardtii in State 2.

Huang, Z.Shen, L.Wang, W.Mao, Z.Yi, X.Kuang, T.Shen, J.R.Zhang, X.Han, G.

(2021) Nat Commun 12: 1100-1100

  • DOI: https://doi.org/10.1038/s41467-021-21362-6
  • Primary Citation of Related Structures:  
    7D0J

  • PubMed Abstract: 

    Photosystem I (PSI) and II (PSII) balance their light energy distribution absorbed by their light-harvesting complexes (LHCs) through state transition to maintain the maximum photosynthetic performance and to avoid photodamage. In state 2, a part of LHCII moves to PSI, forming a PSI-LHCI-LHCII supercomplex. The green alga Chlamydomonas reinhardtii exhibits state transition to a far larger extent than higher plants. Here we report the cryo-electron microscopy structure of a PSI-LHCI-LHCII supercomplex in state 2 from C. reinhardtii at 3.42 Å resolution. The result reveals that the PSI-LHCI-LHCII of C. reinhardtii binds two LHCII trimers in addition to ten LHCI subunits. The PSI core subunits PsaO and PsaH, which were missed or not well-resolved in previous Cr-PSI-LHCI structures, are observed. The present results reveal the organization and assembly of PSI core subunits, LHCI and LHCII, pigment arrangement, and possible pathways of energy transfer from peripheral antennae to the PSI core.


  • Organizational Affiliation

    Department of Biophysics, and Department of Pathology of Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I P700 chlorophyll a apoprotein A1740Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.97.1.12
Membrane Entity: Yes 
UniProt
Find proteins for P12154 (Chlamydomonas reinhardtii)
Explore P12154 
Go to UniProtKB:  P12154
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP12154
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I P700 chlorophyll a apoprotein A2734Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.97.1.12
Membrane Entity: Yes 
UniProt
Find proteins for P09144 (Chlamydomonas reinhardtii)
Explore P09144 
Go to UniProtKB:  P09144
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP09144
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I iron-sulfur center80Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1.97.1.12
Membrane Entity: Yes 
UniProt
Find proteins for Q00914 (Chlamydomonas reinhardtii)
Explore Q00914 
Go to UniProtKB:  Q00914
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ00914
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit II, chloroplastic144Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q39615 (Chlamydomonas reinhardtii)
Explore Q39615 
Go to UniProtKB:  Q39615
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ39615
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit IV, chloroplastic63Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P12352 (Chlamydomonas reinhardtii)
Explore P12352 
Go to UniProtKB:  P12352
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP12352
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit F, Photosystem I reaction center subunit III, chloroplastic165Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P12356 (Chlamydomonas reinhardtii)
Explore P12356 
Go to UniProtKB:  P12356
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP12356
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit V, chloroplastic91Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P14224 (Chlamydomonas reinhardtii)
Explore P14224 
Go to UniProtKB:  P14224
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP14224
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit VI, chloroplastic100Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P13352 (Chlamydomonas reinhardtii)
Explore P13352 
Go to UniProtKB:  P13352
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP13352
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit VIII37Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A8IFG7 (Chlamydomonas reinhardtii)
Explore A8IFG7 
Go to UniProtKB:  A8IFG7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8IFG7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit IX41Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P59777 (Chlamydomonas reinhardtii)
Explore P59777 
Go to UniProtKB:  P59777
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP59777
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit psaK, chloroplastic85Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P14225 (Chlamydomonas reinhardtii)
Explore P14225 
Go to UniProtKB:  P14225
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP14225
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
PSI subunit V159Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A8IL32 (Chlamydomonas reinhardtii)
Explore A8IL32 
Go to UniProtKB:  A8IL32
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8IL32
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I subunit OM [auth O]93Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8JCL6 (Chlamydomonas reinhardtii)
Explore A8JCL6 
Go to UniProtKB:  A8JCL6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8JCL6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticN [auth P],
O [auth Q],
P [auth R],
R [auth T],
S [auth U]
219Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q93WL4 (Chlamydomonas reinhardtii)
Explore Q93WL4 
Go to UniProtKB:  Q93WL4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ93WL4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticQ [auth S]234Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8J264 (Chlamydomonas reinhardtii)
Explore A8J264 
Go to UniProtKB:  A8J264
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8J264
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticCA [auth a],
T [auth 1]
194Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q05093 (Chlamydomonas reinhardtii)
Explore Q05093 
Go to UniProtKB:  Q05093
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ05093
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticU [auth 2]201Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8IKC8 (Chlamydomonas reinhardtii)
Explore A8IKC8 
Go to UniProtKB:  A8IKC8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8IKC8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticV [auth 3]203Chlamydomonas reinhardtiiMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticW [auth 4]205Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q75VZ0 (Chlamydomonas reinhardtii)
Explore Q75VZ0 
Go to UniProtKB:  Q75VZ0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ75VZ0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticX [auth 5]225Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q75VY8 (Chlamydomonas reinhardtii)
Explore Q75VY8 
Go to UniProtKB:  Q75VY8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ75VY8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticY [auth 6]230Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q75VY6 (Chlamydomonas reinhardtii)
Explore Q75VY6 
Go to UniProtKB:  Q75VY6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ75VY6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticZ [auth 7]213Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q75VY4 (Chlamydomonas reinhardtii)
Explore Q75VY4 
Go to UniProtKB:  Q75VY4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ75VY4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticAA [auth 8]217Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q75VY7 (Chlamydomonas reinhardtii)
Explore Q75VY7 
Go to UniProtKB:  Q75VY7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ75VY7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticBA [auth 9]182Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q8S567 (Chlamydomonas reinhardtii)
Explore Q8S567 
Go to UniProtKB:  Q8S567
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8S567
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 12 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
DGD
Query on DGD

Download Ideal Coordinates CCD File 
AE [auth B],
YD [auth B]
DIGALACTOSYL DIACYL GLYCEROL (DGDG)
C51 H96 O15
LDQFLSUQYHBXSX-HXXRYREZSA-N
CHL
Query on CHL

Download Ideal Coordinates CCD File 
AG [auth P]
AJ [auth T]
BG [auth P]
BJ [auth T]
BR [auth a]
AG [auth P],
AJ [auth T],
BG [auth P],
BJ [auth T],
BR [auth a],
CI [auth S],
CJ [auth T],
CN [auth 4],
CP [auth 7],
DK [auth 1],
GI [auth S],
GO [auth 6],
HI [auth S],
HO [auth 6],
II [auth S],
IK [auth 1],
IO [auth 6],
JH [auth R],
JI [auth S],
JN [auth 5],
KI [auth S],
KM [auth 4],
KN [auth 5],
LG [auth P],
LM [auth 4],
MM [auth 4],
NH [auth R],
OG [auth P],
OH [auth R],
PH [auth R],
PQ [auth 9],
QH [auth R],
QQ [auth 9],
RG [auth Q],
RH [auth R],
RJ [auth U],
RO [auth 6],
SJ [auth U],
SL [auth 3],
TF [auth P],
TJ [auth U],
TN [auth 5],
UJ [auth U],
UM [auth 4],
VG [auth Q],
VI [auth S],
VJ [auth U],
WG [auth Q],
WI [auth T],
XF [auth P],
XG [auth Q],
XP [auth 8],
YF [auth P],
YG [auth Q],
ZF [auth P],
ZI [auth T]
CHLOROPHYLL B
C55 H70 Mg N4 O6
MWVCRINOIIOUAU-UYSPMESUSA-M
CLA
Query on CLA

Download Ideal Coordinates CCD File 
AB [auth A]
AD [auth B]
AF [auth K]
AH [auth Q]
AL [auth 2]
AB [auth A],
AD [auth B],
AF [auth K],
AH [auth Q],
AL [auth 2],
AM [auth 3],
AO [auth 5],
AP [auth 7],
AQ [auth 8],
AR [auth a],
BB [auth A],
BC [auth A],
BD [auth B],
BE [auth B],
BF [auth K],
BH [auth Q],
BI [auth S],
BL [auth 2],
BO [auth 6],
BP [auth 7],
BQ [auth 8],
CB [auth A],
CD [auth B],
CF [auth K],
CG [auth P],
CH [auth Q],
CL [auth 2],
CQ [auth 8],
CR [auth a],
DA [auth A],
DB [auth A],
DC [auth A],
DD [auth B],
DF [auth K],
DG [auth P],
DH [auth Q],
DI [auth S],
DJ [auth T],
DL [auth 2],
DO [auth 6],
DP [auth 7],
DQ [auth 8],
DR [auth a],
EA [auth A],
EB [auth A],
ED [auth B],
EG [auth P],
EI [auth S],
EJ [auth T],
EK [auth 1],
EL [auth 2],
EN [auth 5],
EO [auth 6],
EP [auth 7],
EQ [auth 8],
ER [auth a],
FA [auth A],
FB [auth A],
FC [auth B],
FD [auth B],
FF [auth L],
FG [auth P],
FI [auth S],
FJ [auth T],
FK [auth 1],
FL [auth 2],
FN [auth 5],
FO [auth 6],
FP [auth 7],
FQ [auth 8],
FR [auth a],
GA [auth A],
GB [auth A],
GC [auth B],
GD [auth B],
GF [auth L],
GJ [auth T],
GK [auth 1],
GL [auth 2],
GM [auth 3],
GN [auth 5],
GP [auth 7],
GR [auth a],
HA [auth A],
HB [auth A],
HC [auth B],
HD [auth B],
HE [auth F],
HJ [auth T],
HK [auth 1],
HL [auth 2],
HM [auth 4],
HN [auth 5],
HP [auth 7],
HR [auth a],
IA [auth A],
IB [auth A],
IC [auth B],
ID [auth B],
IH [auth Q],
IL [auth 2],
IM [auth 4],
IN [auth 5],
IP [auth 7],
IR [auth a],
JA [auth A],
JB [auth A],
JC [auth B],
JD [auth B],
JE [auth G],
JF [auth L],
JK [auth 1],
JL [auth 2],
JM [auth 4],
JO [auth 6],
JP [auth 7],
JR [auth a],
KA [auth A],
KB [auth A],
KC [auth B],
KD [auth B],
KE [auth G],
KF [auth L],
KH [auth R],
KK [auth 1],
KO [auth 6],
KP [auth 7],
KQ [auth 9],
LA [auth A],
LB [auth A],
LC [auth B],
LD [auth B],
LH [auth R],
LI [auth S],
LK [auth 1],
LN [auth 5],
LO [auth 6],
LQ [auth 9],
MA [auth A],
MB [auth A],
MC [auth B],
MD [auth B],
ME [auth H],
MH [auth R],
MI [auth S],
MK [auth 1],
MN [auth 5],
MO [auth 6],
MQ [auth 9],
NA [auth A],
NB [auth A],
NC [auth B],
ND [auth B],
NE [auth H],
NF [auth L],
NI [auth S],
NK [auth 1],
NL [auth 3],
NM [auth 4],
NN [auth 5],
NO [auth 6],
NQ [auth 9],
OA [auth A],
OB [auth A],
OC [auth B],
OD [auth B],
OE [auth H],
OF [auth O],
OI [auth S],
OJ [auth U],
OK [auth 1],
OL [auth 3],
OM [auth 4],
ON [auth 5],
OO [auth 6],
OQ [auth 9],
PA [auth A],
PB [auth A],
PC [auth B],
PD [auth B],
PF [auth O],
PI [auth S],
PJ [auth U],
PK [auth 1],
PL [auth 3],
PM [auth 4],
PN [auth 5],
PO [auth 6],
QA [auth A],
QB [auth A],
QC [auth B],
QD [auth B],
QE [auth H],
QF [auth O],
QJ [auth U],
QK [auth 1],
QL [auth 3],
QM [auth 4],
QN [auth 5],
QO [auth 6],
RA [auth A],
RC [auth B],
RL [auth 3],
RM [auth 4],
RN [auth 5],
RQ [auth 9],
SA [auth A],
SB [auth A],
SC [auth B],
SG [auth Q],
SH [auth R],
SM [auth 4],
SN [auth 5],
SP [auth 8],
SQ [auth 9],
TA [auth A],
TC [auth B],
TG [auth Q],
TH [auth R],
TL [auth 3],
TM [auth 4],
TP [auth 8],
TQ [auth 9],
UA [auth A],
UC [auth B],
UE [auth J],
UF [auth P],
UG [auth Q],
UH [auth R],
UI [auth S],
UL [auth 3],
UO [auth 6],
UP [auth 8],
UQ [auth 9],
VA [auth A],
VC [auth B],
VF [auth P],
VH [auth R],
VL [auth 3],
VN [auth 5],
VP [auth 8],
WA [auth A],
WC [auth B],
WE [auth J],
WF [auth P],
WH [auth R],
WJ [auth U],
WL [auth 3],
WP [auth 8],
XA [auth A],
XC [auth B],
XI [auth T],
XJ [auth U],
XK [auth 2],
XL [auth 3],
XO [auth 6],
XQ [auth a],
YA [auth A],
YC [auth B],
YI [auth T],
YJ [auth U],
YK [auth 2],
YL [auth 3],
YO [auth 7],
YP [auth 8],
YQ [auth a],
ZA [auth A],
ZC [auth B],
ZE [auth K],
ZG [auth Q],
ZJ [auth U],
ZK [auth 2],
ZL [auth 3],
ZO [auth 7],
ZP [auth 8],
ZQ [auth a]
CHLOROPHYLL A
C55 H72 Mg N4 O5
ATNHDLDRLWWWCB-AENOIHSZSA-M
SQD
Query on SQD

Download Ideal Coordinates CCD File 
CE [auth B]1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
C41 H78 O12 S
RVUUQPKXGDTQPG-JUDHQOGESA-N
LMG
Query on LMG

Download Ideal Coordinates CCD File 
AN [auth 4]
CO [auth 6]
PE [auth H]
PP [auth 7]
QP [auth 7]
AN [auth 4],
CO [auth 6],
PE [auth H],
PP [auth 7],
QP [auth 7],
TE [auth J],
VE [auth J],
VK [auth 1],
WK [auth 2],
YE [auth J]
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
C45 H86 O10
DCLTVZLYPPIIID-CVELTQQQSA-N
LHG
Query on LHG

Download Ideal Coordinates CCD File 
AI [auth R]
CC [auth A]
DN [auth 5]
HH [auth Q]
JQ [auth 8]
AI [auth R],
CC [auth A],
DN [auth 5],
HH [auth Q],
JQ [auth 8],
KG [auth P],
MJ [auth T],
ML [auth 2],
NR [auth a],
OP [auth 7],
QG [auth P],
SO [auth 6],
TB [auth A],
TI [auth S],
UB [auth A],
UK [auth 1],
XN [auth 5],
YM [auth 4],
ZD [auth B],
ZM [auth 4]
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
C38 H75 O10 P
BIABMEZBCHDPBV-MPQUPPDSSA-N
NEX
Query on NEX

Download Ideal Coordinates CCD File 
CK [auth U]
JG [auth P]
LJ [auth T]
NG [auth P]
NJ [auth U]
CK [auth U],
JG [auth P],
LJ [auth T],
NG [auth P],
NJ [auth U],
ZH [auth R]
(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL
C40 H56 O4
PGYAYSRVSAJXTE-OQASCVKESA-N
XAT
Query on XAT

Download Ideal Coordinates CCD File 
GH [auth Q]
IG [auth P]
KJ [auth T]
MG [auth P]
PG [auth P]
GH [auth Q],
IG [auth P],
KJ [auth T],
MG [auth P],
PG [auth P],
SI [auth S]
(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
C40 H56 O4
SZCBXWMUOPQSOX-WVJDLNGLSA-N
LUT
Query on LUT

Download Ideal Coordinates CCD File 
AK [auth U]
BK [auth U]
BM [auth 3]
CM [auth 3]
EH [auth Q]
AK [auth U],
BK [auth U],
BM [auth 3],
CM [auth 3],
EH [auth Q],
FH [auth Q],
GG [auth P],
GQ [auth 8],
HG [auth P],
HQ [auth 8],
IJ [auth T],
JJ [auth T],
KL [auth 2],
KR [auth a],
LL [auth 2],
LP [auth 7],
LR [auth a],
MP [auth 7],
MR [auth a],
QI [auth S],
RI [auth S],
RK [auth 1],
SK [auth 1],
TK [auth 1],
TO [auth 6],
UN [auth 5],
VM [auth 4],
VQ [auth 9],
WM [auth 4],
WO [auth 6],
WQ [auth 9],
XH [auth R],
YH [auth R],
YN [auth 5]
(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
C40 H56 O2
KBPHJBAIARWVSC-NSIPBSJQSA-N
BCR
Query on BCR

Download Ideal Coordinates CCD File 
BN [auth 4]
DE [auth B]
DM [auth 3]
EC [auth A]
EF [auth K]
BN [auth 4],
DE [auth B],
DM [auth 3],
EC [auth A],
EF [auth K],
EM [auth 3],
FM [auth 3],
GE [auth F],
HF [auth L],
IE [auth F],
IF [auth L],
IQ [auth 8],
LE [auth G],
LF [auth L],
MF [auth L],
NP [auth 7],
RE [auth I],
RF [auth O],
RP [auth 8],
SD [auth B],
SE [auth J],
SF [auth O],
TD [auth B],
UD [auth B],
VB [auth A],
VD [auth B],
VO [auth 6],
WB [auth A],
WD [auth B],
WN [auth 5],
XB [auth A],
XD [auth B],
XE [auth J],
XM [auth 4],
YB [auth A],
ZB [auth A],
ZN [auth 5]
BETA-CAROTENE
C40 H56
OENHQHLEOONYIE-JLTXGRSLSA-N
PQN
Query on PQN

Download Ideal Coordinates CCD File 
RB [auth A],
RD [auth B]
PHYLLOQUINONE
C31 H46 O2
MBWXNTAXLNYFJB-NKFFZRIASA-N
SF4
Query on SF4

Download Ideal Coordinates CCD File 
AC [auth A],
EE [auth C],
FE [auth C]
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
TPO
Query on TPO
Q [auth S]L-PEPTIDE LINKINGC4 H10 N O6 PTHR
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.42 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Chinese Academy of SciencesChinaQYZDY-SSW-SMC003
Chinese Academy of SciencesChinaXDB17000000
National Basic Research Program of China (973 Program)China2015CB150100

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-03
    Type: Initial release
  • Version 2.0: 2024-10-23
    Changes: Data collection, Database references, Non-polymer description, Structure summary