7CX7

Crystal structure of Arabinose isomerase from hybrid AI8


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.192 
  • R-Value Observed: 0.196 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of Arabinose isomerase from hyper thermophilic bacterium Thermotoga maritima (TMAI) wt

Hoang, N.K.Q.Dhanasingh, I.Cao, T.P.Sung, J.Y.Shin, S.M.Lee, D.W.Lee, S.H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
L-arabinose isomerase
A, B, C, D, E
A, B, C, D, E, F
497Geobacillus kaustophilus HTA426Alicyclobacillus sp. TP7Alicyclobacillus acidocaldarius subsp. acidocaldariusMutation(s): 0 
Gene Names: araAGK1904
EC: 5.3.1.4
UniProt
Find proteins for K0IGW6 (Alicyclobacillus sp. TP7)
Explore K0IGW6 
Go to UniProtKB:  K0IGW6
Find proteins for Q5KYP7 (Geobacillus kaustophilus (strain HTA426))
Explore Q5KYP7 
Go to UniProtKB:  Q5KYP7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ5KYP7K0IGW6
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
MPD
Query on MPD

Download Ideal Coordinates CCD File 
G [auth A]
H [auth A]
K [auth B]
M [auth C]
N [auth C]
G [auth A],
H [auth A],
K [auth B],
M [auth C],
N [auth C],
S [auth E],
T [auth E],
W [auth F],
X [auth F]
(4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
GOL
Query on GOL

Download Ideal Coordinates CCD File 
O [auth C]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
MN (Subject of Investigation/LOI)
Query on MN

Download Ideal Coordinates CCD File 
I [auth A]
J [auth A]
L [auth B]
P [auth C]
Q [auth C]
I [auth A],
J [auth A],
L [auth B],
P [auth C],
Q [auth C],
R [auth D],
U [auth E],
V [auth E],
Y [auth F]
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.192 
  • R-Value Observed: 0.196 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 204.591α = 90
b = 81.907β = 117.9
c = 192.001γ = 90
Software Package:
Software NamePurpose
HKL-2000data reduction
HKL-2000data scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-01
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Refinement description