7CU9

Crystal structure of the soluble domain of TiME protein from Mycobacterium smegmatis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.172 
  • R-Value Work: 0.159 
  • R-Value Observed: 0.160 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Identification and architecture of a putative secretion tube across mycobacterial outer envelope.

Cai, X.Liu, L.Qiu, C.Wen, C.He, Y.Cui, Y.Li, S.Zhang, X.Zhang, L.Tian, C.Bi, L.Zhou, Z.H.Gong, W.

(2021) Sci Adv 7

  • DOI: https://doi.org/10.1126/sciadv.abg5656
  • Primary Citation of Related Structures:  
    7CU8, 7CU9

  • PubMed Abstract: 

    Tuberculosis-causing mycobacteria have thick cell-wall and capsule layers that are formed from complex structures. Protein secretion across these barriers depends on a specialized protein secretion system, but none has been reported. We show that Mycobacterium tuberculosis Rv3705c and its homologous MSMEG_6251 in Mycobacterium smegmatis are tube-forming proteins in the mycobacterial envelope (TiME). Crystallographic and cryo-EM structures of these two proteins show that both proteins form rotationally symmetric rings. Two layers of TiME rings pack together in a tail-to-tail manner into a ring-shaped complex, which, in turn, stacks together to form tubes. M. smegmatis TiME was detected mainly in the cell wall and capsule. Knocking out the TiME gene markedly decreased the amount of secreted protein in the M. smegmatis culture medium, and expression of this gene in knocked-out strain partially restored the level of secreted protein. Our structure and functional data thus suggest that TiME forms a protein transport tube across the mycobacterial outer envelope.


  • Organizational Affiliation

    School of Life Sciences, University of Science and Technology of China, Hefei, Anhui, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tube-forming protein in Mycobacterial Envelpe, TiME
A, B
198Mycolicibacterium smegmatis MC2 155Mutation(s): 0 
Gene Names: MSMEG_6251
UniProt
Find proteins for A0R5N2 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Explore A0R5N2 
Go to UniProtKB:  A0R5N2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0R5N2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.172 
  • R-Value Work: 0.159 
  • R-Value Observed: 0.160 
  • Space Group: I 4
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 137.495α = 90
b = 137.495β = 90
c = 66.249γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31570841

Revision History  (Full details and data files)

  • Version 1.0: 2021-08-25
    Type: Initial release
  • Version 1.1: 2022-03-16
    Changes: Database references