7CSK | pdb_00007csk

A 2:1 stoichiometric complex of anticancer drug Adriamycin bound to parallel G-quadruplex DNA [d-(TTGGGGT)]4.

PDB DOI: https://doi.org/10.2210/pdb7CSK/pdb
NAKB: 7CSK

Classification: DNA
Organism(s): Tetrahymena thermophila
Mutation(s): No

Deposited: 2020-08-15 Released: 2021-08-18
Deposition Author(s): Barthwal, R., Tariq, Z., Pandav, K.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 20
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 7CSK

This is version 1.1 of the entry. See complete history.

Literature

A 2:1 stoichiometric complex of anticancer drug Adriamycin bound to parallel G-quadruplex DNA [d-(TTGGGGT)]4.

Barthwal, R., Tariq, Z., Pandav, K.

To be published.

Macromolecule Content

Total Structure Weight: 9.82 kDa
Atom Count: 658
Modeled Residue Count: 28
Deposited Residue Count: 28
Unique nucleic acid chains: 1

Macromolecules

Find similar nucleic acids by: Sequence

Molecule	Chains	Length	Organism	Image
Entity ID: 1
DNA (5'-D(TPTPGPGPGPGP*T)-3')	A, B, C, D	7	Tetrahymena thermophila
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
DM2 (Subject of Investigation/LOI) Query on DM2 Download:Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth A] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] mmCIF format, chain E [auth A] mmCIF format, chain F [auth A]	E [auth A], F [auth A]	DOXORUBICIN C₂₇ H₂₉ N O₁₁ AOJJSUZBOXZQNB-TZSSRYMLSA-N		Interactions Focus chain E [auth A] Focus chain F [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 20
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

Deposition Data

Released Date: 2021-08-18

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-08-18
Type: Initial release
Version 1.1: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.