7CRC

Cryo-EM structure of plant NLR RPP1 tetramer in complex with ATR1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.02 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Direct pathogen-induced assembly of an NLR immune receptor complex to form a holoenzyme.

Ma, S.Lapin, D.Liu, L.Sun, Y.Song, W.Zhang, X.Logemann, E.Yu, D.Wang, J.Jirschitzka, J.Han, Z.Schulze-Lefert, P.Parker, J.E.Chai, J.

(2020) Science 370

  • DOI: https://doi.org/10.1126/science.abe3069
  • Primary Citation of Related Structures:  
    7CRB, 7CRC, 7DFV

  • PubMed Abstract: 

    Direct or indirect recognition of pathogen-derived effectors by plant nucleotide-binding leucine-rich repeat (LRR) receptors (NLRs) initiates innate immune responses. The Hyaloperonospora arabidopsidis effector ATR1 activates the N-terminal Toll-interleukin-1 receptor (TIR) domain of Arabidopsis NLR RPP1. We report a cryo-electron microscopy structure of RPP1 bound by ATR1. The structure reveals a C-terminal jelly roll/Ig-like domain (C-JID) for specific ATR1 recognition. Biochemical and functional analyses show that ATR1 binds to the C-JID and the LRRs to induce an RPP1 tetrameric assembly required for nicotinamide adenine dinucleotide hydrolase (NADase) activity. RPP1 tetramerization creates two potential active sites, each formed by an asymmetric TIR homodimer. Our data define the mechanism of direct effector recognition by a plant NLR leading to formation of a signaling-active holoenzyme.


  • Organizational Affiliation

    Beijing Advanced Innovation Center for Structural Biology, Tsinghua-Peking Center for Life Sciences, Centre for Plant Biology, School of Life Sciences, Tsinghua University, 100084 Beijing, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NAD+ hydrolase (NADase)A,
B,
C,
H [auth D]
1,221Arabidopsis thalianaMutation(s): 0 
EC: 3.2.2.6
UniProt
Find proteins for Q9ZSN5 (Arabidopsis thaliana)
Explore Q9ZSN5 
Go to UniProtKB:  Q9ZSN5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9ZSN5
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Avirulence protein ATR1D [auth E],
E [auth H],
F,
G
311Hyaloperonospora arabidopsidis Emoy2Mutation(s): 0 
Gene Names: ATR1ATR1-NdWsB
UniProt
Find proteins for M4B6G6 (Hyaloperonospora arabidopsidis (strain Emoy2))
Explore M4B6G6 
Go to UniProtKB:  M4B6G6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupM4B6G6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.02 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31421001 for J.C.
Alexander von Humboldt FoundationGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-16
    Type: Initial release
  • Version 1.1: 2024-03-27
    Changes: Data collection, Database references