7CMX | pdb_00007cmx

Isocitrate lyase from Bacillus cereus ATCC 14579

PDB DOI: https://doi.org/10.2210/pdb7CMX/pdb

Classification: LYASE
Organism(s): Bacillus cereus ATCC 14579
Expression System: Escherichia coli K-12
Mutation(s): No

Deposited: 2020-07-29 Released: 2021-08-04
Deposition Author(s): Kim, K., Ki, D., Lee, S.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.79 Å
R-Value Free:
0.217 (Depositor), 0.220 (DCC)
R-Value Work:
0.175 (Depositor), 0.180 (DCC)
R-Value Observed:
0.177 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Isocitrate lyase from Bacillus cereus ATCC 14579

Kim, K., Ki, D., Lee, S.H.

To be published.

Macromolecule Content

Total Structure Weight: 191.91 kDa
Atom Count: 14,088
Modeled Residue Count: 1,687
Deposited Residue Count: 1,732
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Isocitrate lyase	A, B, C, D	433	Bacillus cereus ATCC 14579	Mutation(s): 0 Gene Names: BC_1128 EC: 4.1.3.1
UniProt
Find proteins for Q81GQ9 (Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)) Explore Q81GQ9 Go to UniProtKB: Q81GQ9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q81GQ9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.79 Å
R-Value Free: 0.217 (Depositor), 0.220 (DCC)
R-Value Work: 0.175 (Depositor), 0.180 (DCC)
R-Value Observed: 0.177 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.92	α = 90
b = 123.539	β = 90
c = 170.688	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2021-08-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-08-04
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.