Crystal structure of the Fab antibody complexed with human YKL-40
Choi, S., Na, J.H., Lee, S.J., Woo, J.R., Kim, D.Y., Lee, W.K.To be published.
Experimental Data Snapshot
Starting Models: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Fab(Heavy chain) | A [auth C], E [auth K] | 222 | Homo sapiens | Mutation(s): 0  | ![]() |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Fab(Light chain) | B [auth D], F [auth L] | 215 | Homo sapiens | Mutation(s): 0  | ![]() |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chitinase 3-like 1 (Cartilage glycoprotein-39), isoform CRA_a | C [auth A], D [auth B] | 362 | Homo sapiens | Mutation(s): 0  Gene Names: CHI3L1, hCG_24326 | ![]() |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P36222 (Homo sapiens) Explore P36222  Go to UniProtKB:  P36222 | |||||
PHAROS:  P36222 GTEx:  ENSG00000133048  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P36222 | ||||
Glycosylation | |||||
Glycosylation Sites: 1 | Go to GlyGen: P36222-1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | G [auth E] | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G15407YE GlyCosmos:  G15407YE GlyGen:  G15407YE |
Length ( Å ) | Angle ( ˚ ) |
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a = 89.583 | α = 90 |
b = 132.526 | β = 90 |
c = 160.007 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHENIX | phasing |