7CHX | pdb_00007chx

acylphosphatase from Staphylococcus aureus

PDB DOI: https://doi.org/10.2210/pdb7CHX/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Staphylococcus aureus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-07-06 Released: 2021-07-14
Deposition Author(s): Lee, K.-Y., Kim, D.-G., Lee, B.-J.
Funding Organization(s): National Research Foundation (NRF, Korea)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.49 Å
R-Value Free:
0.240 (Depositor), 0.208 (DCC)
R-Value Work:
0.201 (Depositor), 0.203 (DCC)
R-Value Observed:
0.203 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 7CHX

This is version 1.1 of the entry. See complete history.

Literature

acylphosphatase from Staphylococcus aureus

Lee, K.-Y.

To be published.

Macromolecule Content

Total Structure Weight: 24.41 kDa
Atom Count: 1,588
Modeled Residue Count: 182
Deposited Residue Count: 210
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acylphosphatase	A, B	105	Staphylococcus aureus	Mutation(s): 0 Gene Names: acyP, yccX, BN1321_260044, BTN44_05560, DDL17_12795, DQV20_10240, DQV53_07555, E4U00_04725, EP54_14800, EQ90_12880... acyP, yccX, BN1321_260044, BTN44_05560, DDL17_12795, DQV20_10240, DQV53_07555, E4U00_04725, EP54_14800, EQ90_12880, ERS072840_02314, FA040_08725, FVP29_18130, GIX97_03140, GO677_08310, GO706_12140, GO746_10695, GO793_05135, GO803_14910, GO805_11030, GO810_04440, GO894_09605, GO941_00230, HMPREF3211_00435, M1K003_0247, NCTC10654_01455, NCTC10702_02217, NCTC5664_03214, NCTC6133_01806, NCTC7878_01640, NCTC9944_01419, RK64_07545, SAMEA1469856_01199, SAMEA1469884_02272, SAMEA1531680_02336, SAMEA1531701_02465, SAMEA2080329_01054, SAMEA2080330_01500, SAMEA2080334_01727, SAMEA2080433_01274, SAST44_01480, SAST45_01515 EC: 3.6.1.7
UniProt
Find proteins for Q2FYM9 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FYM9 Go to UniProtKB: Q2FYM9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q2FYM9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.49 Å
R-Value Free: 0.240 (Depositor), 0.208 (DCC)
R-Value Work: 0.201 (Depositor), 0.203 (DCC)
R-Value Observed: 0.203 (Depositor)

Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.124	α = 90
b = 77.124	β = 90
c = 35.319	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling
REFMAC	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2021-07-14

Deposition Author(s):

Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	NRF-2018R1A2A1A19018526
National Research Foundation (NRF, Korea)	Korea, Republic Of	NRF-2018R1A5A2024425
National Research Foundation (NRF, Korea)	Korea, Republic Of	NRF-2016R1C1B2014609
National Research Foundation (NRF, Korea)	Korea, Republic Of	NRF-2019R1H1A1102102

Revision History (Full details and data files)

Version 1.0: 2021-07-14
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.