7CCM | pdb_00007ccm

Crystal structure of selenomethionine-derived human BFK

PDB DOI: https://doi.org/10.2210/pdb7CCM/pdb

Classification: APOPTOSIS
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-06-17 Released: 2021-06-23
Deposition Author(s): Oh, E.K., Jang, D.M., Han, B.W.
Funding Organization(s): National Research Foundation (NRF, Korea)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free:
0.254 (Depositor), 0.250 (DCC)
R-Value Work:
0.212 (Depositor), 0.217 (DCC)

wwPDB Validation 3D Report Full Report

Validation slider image for 7CCM

This is version 1.1 of the entry. See complete history.

Literature

Structural analyses on human BFK, a Novel BCL-2 Family Member.

Jang, D.M., Oh, E.K., Han, B.W.

To be published.

Macromolecule Content

Total Structure Weight: 60.71 kDa
Atom Count: 3,329
Modeled Residue Count: 435
Deposited Residue Count: 549
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bcl-2-like protein 15	A, B, C	183	Homo sapiens	Mutation(s): 0 Gene Names: BCL2L15, C1orf178
UniProt & NIH Common Fund Data Resources
Find proteins for Q5TBC7 (Homo sapiens) Explore Q5TBC7 Go to UniProtKB: Q5TBC7
PHAROS: Q5TBC7 GTEx: ENSG00000188761
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5TBC7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free: 0.254 (Depositor), 0.250 (DCC)
R-Value Work: 0.212 (Depositor), 0.217 (DCC)

Space Group: P 3₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 116.156	α = 90
b = 116.156	β = 90
c = 27.679	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
AutoSol	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2021-06-23

Deposition Author(s):

Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	2011-0030001

Revision History (Full details and data files)

Version 1.0: 2021-06-23
Type: Initial release
Version 1.1: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.