Structural basis for transcription inhibition by E. coli SspA
Wei, L., Yu, F.(2020) Nucleic Acids Res 
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
A newer entry is available that reflects an alternative modeling of the original data: 7DY6
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Stringent starvation protein A | B [auth I], C [auth J] | 212 | Escherichia coli | Mutation(s): 0  Gene Names: sspA EC: 2.5.1.18 | |
UniProt | |||||
Find proteins for P0ACA3 (Escherichia coli (strain K12)) Explore P0ACA3  Go to UniProtKB:  P0ACA3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0ACA3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit alpha | D [auth K], E [auth A], F [auth B] | 329 | Escherichia coli | Mutation(s): 0  Gene Names: rpoA, ECPG_02615 EC: 2.7.7.6 | |
UniProt | |||||
Find proteins for P0A7Z4 (Escherichia coli (strain K12)) Explore P0A7Z4  Go to UniProtKB:  P0A7Z4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7Z4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit beta | G [auth C] | 1,342 | Escherichia coli K-12 | Mutation(s): 1  Gene Names: rpoB, groN, nitB, rif, ron, stl, stv, tabD, b3987, JW3950 EC: 2.7.7.6 | |
UniProt | |||||
Find proteins for P0A8V2 (Escherichia coli (strain K12)) Explore P0A8V2  Go to UniProtKB:  P0A8V2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A8V2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit beta' | H [auth D] | 1,407 | Escherichia coli | Mutation(s): 0  Gene Names: rpoC EC: 2.7.7.6 | |
UniProt | |||||
Find proteins for P0A8T7 (Escherichia coli (strain K12)) Explore P0A8T7  Go to UniProtKB:  P0A8T7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A8T7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit omega | I [auth E] | 91 | Escherichia coli | Mutation(s): 0  Gene Names: rpoZ EC: 2.7.7.6 | |
UniProt | |||||
Find proteins for P0A800 (Escherichia coli (strain K12)) Explore P0A800  Go to UniProtKB:  P0A800 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A800 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
RNA polymerase sigma factor RpoD | J [auth F] | 613 | Escherichia coli | Mutation(s): 0  Gene Names: rpoD | |
UniProt | |||||
Find proteins for P00579 (Escherichia coli (strain K12)) Explore P00579  Go to UniProtKB:  P00579 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00579 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 1 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (63-mer) | A [auth H] | 63 | Escherichia coli | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (63-mer) | K [auth G] | 63 | Escherichia coli | ||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN (Subject of Investigation/LOI) Query on ZN | M [auth D], N [auth D] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG (Subject of Investigation/LOI) Query on MG | L [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Task | Software Package | Version |
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RECONSTRUCTION | RELION | 3.0 |