7C4U

MicroED structure of orthorhombic Vancomycin at 1.2 A resolution


Experimental Data Snapshot

  • Method: ELECTRON CRYSTALLOGRAPHY
  • Resolution: 1.20 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.203 

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This is version 1.3 of the entry. See complete history


Literature

Precise Control Over Kinetics of Molecular Assembly: Production of Particles with Tunable Sizes and Crystalline Forms.

Fan, Q.Li, L.Xue, H.Zhou, H.Zhao, L.Liu, J.Mao, J.Wu, S.Zhang, S.Wu, C.Li, X.Zhou, X.Wang, J.

(2020) Angew Chem Int Ed Engl 59: 15141-15146

  • DOI: https://doi.org/10.1002/anie.202003922
  • Primary Citation of Related Structures:  
    7C4U, 7C4V

  • PubMed Abstract: 

    It has been long-pursued but remains a challenge to precisely manipulate the molecular assembly process to obtain desired functional structures. Reported here is the control over the assembly of solute molecules, by a programmed recrystallization of solvent crystal grains, to form micro/nanoparticles with tunable sizes and crystalline forms. A quantitative correlation between the protocol of recrystallization temperature and the assembly kinetics results in precise control over the size of assembled particles, ranging from single-atom catalysts, pure drug nanoparticles, to sub-millimeter organic-semiconductor single crystals. The extensive regulation of the assembly rates leads to the unique and powerful capability of tuning the stacking of molecules, involving the formation of single crystals of notoriously crystallization-resistant molecules and amorphous structures of molecules with a very high propensity to crystallize, which endows it with wide-ranging applications.


  • Organizational Affiliation

    Key Laboratory of Green Printing, Beijing National Laboratory for Molecular Science, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Vancomycin
A, B
7Amycolatopsis orientalisMutation(s): 0 
Glycosylation
Glycosylation Sites: 1
Sequence Annotations
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChains Length2D Diagram Glycosylation3D Interactions
vancosamine-(1-2)-beta-D-glucopyranose
C, D
2N/A
Glycosylation Resources
GlyTouCan:  G14263HU
GlyCosmos:  G14263HU
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CL (Subject of Investigation/LOI)
Query on CL

Download Ideal Coordinates CCD File 
E [auth A]CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
OMY
Query on OMY
A, B
L-PEPTIDE LINKINGC9 H10 Cl N O4TYR
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON CRYSTALLOGRAPHY
  • Resolution: 1.20 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.203 
  • Space Group: P 2 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 20.06α = 90
b = 33.02β = 90
c = 41.72γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, China)China51925307
National Science Foundation (NSF, China)China21733010

Revision History  (Full details and data files)

  • Version 1.0: 2020-08-12
    Type: Initial release
  • Version 1.1: 2020-08-19
    Changes: Data collection
  • Version 1.2: 2020-08-26
    Changes: Data collection
  • Version 1.3: 2021-03-17
    Changes: Database references