7BQQ

Solution NMR structure of fold-Z Gogy; de novo designed protein with an asymmetric all-alpha topology

PDB DOI: https://doi.org/10.2210/pdb7BQQ/pdb
BMRB: 36337

Classification: DE NOVO PROTEIN
Organism(s): synthetic construct
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-03-25 Released: 2021-04-07
Deposition Author(s): Kobayashi, N., Sugiki, T., Fujiwara, T., Sakuma, K., Kosugi, T., Koga, R., Koga, N.
Funding Organization(s): Japan Society for the Promotion of Science (JSPS), Japan Agency for Medical Research and Development (AMED), Japan Science and Technology

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Design of complicated all-alpha protein structures

Sakuma, K., Kobayashi, N., Sugiki, T., Nagashima, T., Fujiwara, T., Suzuki, K., Kobayashi, N., Murata, T., Kosugi, T., Koga, R., Koga, N.

(2024) Nat Struct Mol Biol

DOI: https://doi.org/10.1038/s41594-023-01147-9

Macromolecule Content

Total Structure Weight: 15.3 kDa
Atom Count: 1,068
Modelled Residue Count: 130
Deposited Residue Count: 130
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gogy	A	130	synthetic construct	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: target function

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2021-04-07

Deposition Author(s):

Funding Organization	Location	Grant Number
Japan Society for the Promotion of Science (JSPS)	Japan	18K06152
Japan Agency for Medical Research and Development (AMED)	Japan	JP19am0101072
Japan Society for the Promotion of Science (JSPS)	Japan	18H05420
Japan Society for the Promotion of Science (JSPS)	Japan	15H05592
Japan Science and Technology	Japan	JPMJPR13AD

Revision History (Full details and data files)

Version 1.0: 2021-04-07
Type: Initial release
Version 1.1: 2023-06-14
Changes: Database references, Other
Version 1.2: 2024-01-10
Changes: Data collection, Database references
Version 1.3: 2024-05-15
Changes: Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.